miRNA display CGI


Results 21 - 32 of 32 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24098 5' -53.9 NC_005262.1 + 40054 0.71 0.531874
Target:  5'- cGCAcGCUGCGG-GCAGGuuggucaaaGCAGgGUGAu -3'
miRNA:   3'- -CGUuCGGCGCCaCGUCC---------UGUUgUACU- -5'
24098 5' -53.9 NC_005262.1 + 46809 0.7 0.575182
Target:  5'- cGCGcucGGCCgGCGGcaGCAGGGCAAUAUcGGu -3'
miRNA:   3'- -CGU---UCGG-CGCCa-CGUCCUGUUGUA-CU- -5'
24098 5' -53.9 NC_005262.1 + 13998 0.69 0.618134
Target:  5'- uCGGGCCGgaCGGUGCAGGggcguccggcgcgGCAGCGgccgGAg -3'
miRNA:   3'- cGUUCGGC--GCCACGUCC-------------UGUUGUa---CU- -5'
24098 5' -53.9 NC_005262.1 + 38528 0.69 0.61924
Target:  5'- uCAGGuuGCGGUGCcAGaGGCGGCGcagGAg -3'
miRNA:   3'- cGUUCggCGCCACG-UC-CUGUUGUa--CU- -5'
24098 5' -53.9 NC_005262.1 + 52338 0.69 0.663475
Target:  5'- cGCGAG-CGCGGUaggcacgaugcGCGGGcGCGGCGUGu -3'
miRNA:   3'- -CGUUCgGCGCCA-----------CGUCC-UGUUGUACu -5'
24098 5' -53.9 NC_005262.1 + 2553 0.68 0.674486
Target:  5'- cCAGGCCGcCGGUGUAGGuGCGccacACGUa- -3'
miRNA:   3'- cGUUCGGC-GCCACGUCC-UGU----UGUAcu -5'
24098 5' -53.9 NC_005262.1 + 46978 0.68 0.685457
Target:  5'- -gAAGUCGCGGcugucgUGCAGGaACucCAUGAg -3'
miRNA:   3'- cgUUCGGCGCC------ACGUCC-UGuuGUACU- -5'
24098 5' -53.9 NC_005262.1 + 37761 0.67 0.749796
Target:  5'- uGCGcGCCGCGGcgagcUGCuGGGCGuaguACGUGc -3'
miRNA:   3'- -CGUuCGGCGCC-----ACGuCCUGU----UGUACu -5'
24098 5' -53.9 NC_005262.1 + 1445 0.66 0.800195
Target:  5'- ----uUCGaCGGUGUAGGGCuGCAUGGu -3'
miRNA:   3'- cguucGGC-GCCACGUCCUGuUGUACU- -5'
24098 5' -53.9 NC_005262.1 + 60814 0.66 0.809786
Target:  5'- aGCAcggaGGCCGauugccCGaUGCcGGGCAGCGUGAg -3'
miRNA:   3'- -CGU----UCGGC------GCcACGuCCUGUUGUACU- -5'
24098 5' -53.9 NC_005262.1 + 28055 0.66 0.828392
Target:  5'- cGCcuuGGCCGUaGUGCcaugcgAGGAuCAGCGUGGc -3'
miRNA:   3'- -CGu--UCGGCGcCACG------UCCU-GUUGUACU- -5'
24098 5' -53.9 NC_005262.1 + 63739 0.75 0.298493
Target:  5'- cGCGAGCCGCGGccuccccggcacauUGCAGGcACuggAGCAUGc -3'
miRNA:   3'- -CGUUCGGCGCC--------------ACGUCC-UG---UUGUACu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.