miRNA display CGI


Results 1 - 20 of 32 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24098 5' -53.9 NC_005262.1 + 59023 1.11 0.001075
Target:  5'- uGCAAGCCGCGGUGCAGGACAACAUGAa -3'
miRNA:   3'- -CGUUCGGCGCCACGUCCUGUUGUACU- -5'
24098 5' -53.9 NC_005262.1 + 60503 0.66 0.819189
Target:  5'- cCGGGCCGCGcGgcGCAGGcCGccaagaGCGUGAc -3'
miRNA:   3'- cGUUCGGCGC-Ca-CGUCCuGU------UGUACU- -5'
24098 5' -53.9 NC_005262.1 + 2396 0.66 0.809786
Target:  5'- gGC-GGCCuGCGGaaGCGGGAUGuCGUGAg -3'
miRNA:   3'- -CGuUCGG-CGCCa-CGUCCUGUuGUACU- -5'
24098 5' -53.9 NC_005262.1 + 50408 0.66 0.800195
Target:  5'- gGCGAucagcGCCGCGGagcGCgAGGGCcGCGUGc -3'
miRNA:   3'- -CGUU-----CGGCGCCa--CG-UCCUGuUGUACu -5'
24098 5' -53.9 NC_005262.1 + 13961 0.66 0.800195
Target:  5'- -uGAGCCGCuGGUGCAccagggggccGGugGGCGa-- -3'
miRNA:   3'- cgUUCGGCG-CCACGU----------CCugUUGUacu -5'
24098 5' -53.9 NC_005262.1 + 988 0.66 0.790426
Target:  5'- gGCGAcCUGCGGgGCGGGGCggUGUaGAg -3'
miRNA:   3'- -CGUUcGGCGCCaCGUCCUGuuGUA-CU- -5'
24098 5' -53.9 NC_005262.1 + 23365 0.67 0.739308
Target:  5'- -gAAGCgCGCGGcgGCgaAGGcccGCAACGUGAa -3'
miRNA:   3'- cgUUCG-GCGCCa-CG--UCC---UGUUGUACU- -5'
24098 5' -53.9 NC_005262.1 + 52061 0.67 0.72871
Target:  5'- uCGAGuCCGgGGUGCGGGAUuuugccGCAUa- -3'
miRNA:   3'- cGUUC-GGCgCCACGUCCUGu-----UGUAcu -5'
24098 5' -53.9 NC_005262.1 + 10838 0.67 0.72871
Target:  5'- cGCGuccGCCGCGcucagGGGGCGGCAUGAg -3'
miRNA:   3'- -CGUu--CGGCGCcacg-UCCUGUUGUACU- -5'
24098 5' -53.9 NC_005262.1 + 19119 0.68 0.718014
Target:  5'- gGCuuGUCGCGGU-CGGG-CAGCAUGu -3'
miRNA:   3'- -CGuuCGGCGCCAcGUCCuGUUGUACu -5'
24098 5' -53.9 NC_005262.1 + 49088 0.68 0.696376
Target:  5'- aGCAGGCCGUuacgauGGcGCcGGGCAugGUGc -3'
miRNA:   3'- -CGUUCGGCG------CCaCGuCCUGUugUACu -5'
24098 5' -53.9 NC_005262.1 + 48475 0.76 0.278816
Target:  5'- cGCGAGCCGCGuGgGCAcGGGCGGCGcGAc -3'
miRNA:   3'- -CGUUCGGCGC-CaCGU-CCUGUUGUaCU- -5'
24098 5' -53.9 NC_005262.1 + 28607 0.75 0.300744
Target:  5'- cGCuucauG-CGCGGcaUGCAGGACGACGUGAa -3'
miRNA:   3'- -CGuu---CgGCGCC--ACGUCCUGUUGUACU- -5'
24098 5' -53.9 NC_005262.1 + 46932 0.75 0.316089
Target:  5'- cGCAAGCCuggauggauuggGCGGaaucGCAGGACAGCAa-- -3'
miRNA:   3'- -CGUUCGG------------CGCCa---CGUCCUGUUGUacu -5'
24098 5' -53.9 NC_005262.1 + 24582 0.72 0.479519
Target:  5'- cGCcguGUCGCGGUGCGcuGACAAgGUGAg -3'
miRNA:   3'- -CGuu-CGGCGCCACGUc-CUGUUgUACU- -5'
24098 5' -53.9 NC_005262.1 + 23405 0.71 0.510656
Target:  5'- -aAGGCgGCGaUGCGgcGGGCAGCAUGAg -3'
miRNA:   3'- cgUUCGgCGCcACGU--CCUGUUGUACU- -5'
24098 5' -53.9 NC_005262.1 + 30409 0.7 0.586147
Target:  5'- aCGAGCCGCGuGcGCuGGACGGCGc-- -3'
miRNA:   3'- cGUUCGGCGC-CaCGuCCUGUUGUacu -5'
24098 5' -53.9 NC_005262.1 + 56040 0.68 0.685457
Target:  5'- cGCAAgggcccGCCGCagaaGGgGCAGGACAucauccugaACGUGAu -3'
miRNA:   3'- -CGUU------CGGCG----CCaCGUCCUGU---------UGUACU- -5'
24098 5' -53.9 NC_005262.1 + 63739 0.75 0.298493
Target:  5'- cGCGAGCCGCGGccuccccggcacauUGCAGGcACuggAGCAUGc -3'
miRNA:   3'- -CGUUCGGCGCC--------------ACGUCC-UG---UUGUACu -5'
24098 5' -53.9 NC_005262.1 + 60814 0.66 0.809786
Target:  5'- aGCAcggaGGCCGauugccCGaUGCcGGGCAGCGUGAg -3'
miRNA:   3'- -CGU----UCGGC------GCcACGuCCUGUUGUACU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.