miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24098 5' -53.9 NC_005262.1 + 59023 1.11 0.001075
Target:  5'- uGCAAGCCGCGGUGCAGGACAACAUGAa -3'
miRNA:   3'- -CGUUCGGCGCCACGUCCUGUUGUACU- -5'
24098 5' -53.9 NC_005262.1 + 48475 0.76 0.278816
Target:  5'- cGCGAGCCGCGuGgGCAcGGGCGGCGcGAc -3'
miRNA:   3'- -CGUUCGGCGC-CaCGU-CCUGUUGUaCU- -5'
24098 5' -53.9 NC_005262.1 + 63739 0.75 0.298493
Target:  5'- cGCGAGCCGCGGccuccccggcacauUGCAGGcACuggAGCAUGc -3'
miRNA:   3'- -CGUUCGGCGCC--------------ACGUCC-UG---UUGUACu -5'
24098 5' -53.9 NC_005262.1 + 28607 0.75 0.300744
Target:  5'- cGCuucauG-CGCGGcaUGCAGGACGACGUGAa -3'
miRNA:   3'- -CGuu---CgGCGCC--ACGUCCUGUUGUACU- -5'
24098 5' -53.9 NC_005262.1 + 46932 0.75 0.316089
Target:  5'- cGCAAGCCuggauggauuggGCGGaaucGCAGGACAGCAa-- -3'
miRNA:   3'- -CGUUCGG------------CGCCa---CGUCCUGUUGUacu -5'
24098 5' -53.9 NC_005262.1 + 34132 0.73 0.39231
Target:  5'- gGCGGGCUGCGcGgGCGcGGGCGGCAUGc -3'
miRNA:   3'- -CGUUCGGCGC-CaCGU-CCUGUUGUACu -5'
24098 5' -53.9 NC_005262.1 + 24582 0.72 0.479519
Target:  5'- cGCcguGUCGCGGUGCGcuGACAAgGUGAg -3'
miRNA:   3'- -CGuu-CGGCGCCACGUc-CUGUUgUACU- -5'
24098 5' -53.9 NC_005262.1 + 52171 0.71 0.510656
Target:  5'- cCGAGCCGaUGGUGCAGGggGCAgaGCggGAu -3'
miRNA:   3'- cGUUCGGC-GCCACGUCC--UGU--UGuaCU- -5'
24098 5' -53.9 NC_005262.1 + 23405 0.71 0.510656
Target:  5'- -aAGGCgGCGaUGCGgcGGGCAGCAUGAg -3'
miRNA:   3'- cgUUCGgCGCcACGU--CCUGUUGUACU- -5'
24098 5' -53.9 NC_005262.1 + 40054 0.71 0.531874
Target:  5'- cGCAcGCUGCGG-GCAGGuuggucaaaGCAGgGUGAu -3'
miRNA:   3'- -CGUuCGGCGCCaCGUCC---------UGUUgUACU- -5'
24098 5' -53.9 NC_005262.1 + 46809 0.7 0.575182
Target:  5'- cGCGcucGGCCgGCGGcaGCAGGGCAAUAUcGGu -3'
miRNA:   3'- -CGU---UCGG-CGCCa-CGUCCUGUUGUA-CU- -5'
24098 5' -53.9 NC_005262.1 + 30409 0.7 0.586147
Target:  5'- aCGAGCCGCGuGcGCuGGACGGCGc-- -3'
miRNA:   3'- cGUUCGGCGC-CaCGuCCUGUUGUacu -5'
24098 5' -53.9 NC_005262.1 + 13998 0.69 0.618134
Target:  5'- uCGGGCCGgaCGGUGCAGGggcguccggcgcgGCAGCGgccgGAg -3'
miRNA:   3'- cGUUCGGC--GCCACGUCC-------------UGUUGUa---CU- -5'
24098 5' -53.9 NC_005262.1 + 38528 0.69 0.61924
Target:  5'- uCAGGuuGCGGUGCcAGaGGCGGCGcagGAg -3'
miRNA:   3'- cGUUCggCGCCACG-UC-CUGUUGUa--CU- -5'
24098 5' -53.9 NC_005262.1 + 52338 0.69 0.663475
Target:  5'- cGCGAG-CGCGGUaggcacgaugcGCGGGcGCGGCGUGu -3'
miRNA:   3'- -CGUUCgGCGCCA-----------CGUCC-UGUUGUACu -5'
24098 5' -53.9 NC_005262.1 + 2553 0.68 0.674486
Target:  5'- cCAGGCCGcCGGUGUAGGuGCGccacACGUa- -3'
miRNA:   3'- cGUUCGGC-GCCACGUCC-UGU----UGUAcu -5'
24098 5' -53.9 NC_005262.1 + 56040 0.68 0.685457
Target:  5'- cGCAAgggcccGCCGCagaaGGgGCAGGACAucauccugaACGUGAu -3'
miRNA:   3'- -CGUU------CGGCG----CCaCGUCCUGU---------UGUACU- -5'
24098 5' -53.9 NC_005262.1 + 46978 0.68 0.685457
Target:  5'- -gAAGUCGCGGcugucgUGCAGGaACucCAUGAg -3'
miRNA:   3'- cgUUCGGCGCC------ACGUCC-UGuuGUACU- -5'
24098 5' -53.9 NC_005262.1 + 49088 0.68 0.696376
Target:  5'- aGCAGGCCGUuacgauGGcGCcGGGCAugGUGc -3'
miRNA:   3'- -CGUUCGGCG------CCaCGuCCUGUugUACu -5'
24098 5' -53.9 NC_005262.1 + 19119 0.68 0.718014
Target:  5'- gGCuuGUCGCGGU-CGGG-CAGCAUGu -3'
miRNA:   3'- -CGuuCGGCGCCAcGUCCuGUUGUACu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.