Results 41 - 60 of 171 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24099 | 3' | -64.8 | NC_005262.1 | + | 51543 | 0.66 | 0.303757 |
Target: 5'- cGGCG-ACCGGCuCGcguaccacguGGUCGCG-CGCg -3' miRNA: 3'- uCCGCuUGGCCG-GC----------CCGGCGCaGCGg -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 60152 | 0.66 | 0.303757 |
Target: 5'- uGGGCGAAguacCCGGCC--GCCGUGaaggCGCUc -3' miRNA: 3'- -UCCGCUU----GGCCGGccCGGCGCa---GCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 22310 | 0.66 | 0.301677 |
Target: 5'- cGGUGAcggugugauugugcGCCGGCaucuGGGCUGCGgucagCGUa -3' miRNA: 3'- uCCGCU--------------UGGCCGg---CCCGGCGCa----GCGg -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 54648 | 0.67 | 0.296867 |
Target: 5'- cGGGUGAuccgcauuccgACCGGcCCGGcGCCG-GUCcucauaGCCg -3' miRNA: 3'- -UCCGCU-----------UGGCC-GGCC-CGGCgCAG------CGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 40565 | 0.67 | 0.296867 |
Target: 5'- cGGGCaacACCGG-CGGuGCCGCGaccgUCGCg -3' miRNA: 3'- -UCCGcu-UGGCCgGCC-CGGCGC----AGCGg -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 17062 | 0.67 | 0.290099 |
Target: 5'- cGGCGAucgauCCGGUCGuGCCGgauugCGCCg -3' miRNA: 3'- uCCGCUu----GGCCGGCcCGGCgca--GCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 30399 | 0.67 | 0.290099 |
Target: 5'- uGGCGccugcGACCuugaGCUGGGCgGCGUCGaCg -3' miRNA: 3'- uCCGC-----UUGGc---CGGCCCGgCGCAGCgG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 52024 | 0.67 | 0.290099 |
Target: 5'- aGGaGCGcGCCcaGGUCGGGCCGC---GCCa -3' miRNA: 3'- -UC-CGCuUGG--CCGGCCCGGCGcagCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 58763 | 0.67 | 0.290099 |
Target: 5'- cAGGC--GCCGGCCGGcgagcaacuGCCGCuGgaggcaGCCg -3' miRNA: 3'- -UCCGcuUGGCCGGCC---------CGGCG-Cag----CGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 46697 | 0.67 | 0.289428 |
Target: 5'- cGGUGGACCuccucgcGGCCc-GCCGCGUCGaCg -3' miRNA: 3'- uCCGCUUGG-------CCGGccCGGCGCAGCgG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 52386 | 0.67 | 0.283452 |
Target: 5'- cGGCGGcCCGGCgCGGcGCgGCuUCGgCg -3' miRNA: 3'- uCCGCUuGGCCG-GCC-CGgCGcAGCgG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 35363 | 0.67 | 0.283452 |
Target: 5'- cGGCGAGCaCGGCgCGGcCCGauUCGaCCu -3' miRNA: 3'- uCCGCUUG-GCCG-GCCcGGCgcAGC-GG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 4125 | 0.67 | 0.283452 |
Target: 5'- -cGCGAaaGCCGGgcauaaaaaaaCGGcGCCGCGUggCGCCg -3' miRNA: 3'- ucCGCU--UGGCCg----------GCC-CGGCGCA--GCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 987 | 0.67 | 0.283452 |
Target: 5'- uGGCGAccuGCgGGgCGGGgCGguguagagcuUGUCGCCg -3' miRNA: 3'- uCCGCU---UGgCCgGCCCgGC----------GCAGCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 16086 | 0.67 | 0.282794 |
Target: 5'- cGGCGAGCCgccgcccGGCgCGGuGCUugGCGUcagacCGCCg -3' miRNA: 3'- uCCGCUUGG-------CCG-GCC-CGG--CGCA-----GCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 29434 | 0.67 | 0.282794 |
Target: 5'- cAGGCGAagGCCcGCaaGGCUGCGgcagaggcgcaggUCGCCg -3' miRNA: 3'- -UCCGCU--UGGcCGgcCCGGCGC-------------AGCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 51379 | 0.67 | 0.276926 |
Target: 5'- -cGCGAcGCCGGCCaaGGCCGCGcCuGaCCg -3' miRNA: 3'- ucCGCU-UGGCCGGc-CCGGCGCaG-C-GG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 4795 | 0.67 | 0.276926 |
Target: 5'- cGGGaucgGAGCCGGCCGcGuaGCGcugguuUCGCCg -3' miRNA: 3'- -UCCg---CUUGGCCGGCcCggCGC------AGCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 17913 | 0.67 | 0.276926 |
Target: 5'- cGGCGAGCCGccgaUCGGcGCCGa--CGCCa -3' miRNA: 3'- uCCGCUUGGCc---GGCC-CGGCgcaGCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 19662 | 0.67 | 0.276926 |
Target: 5'- -cGCGu-CCGGCCGGaaCGCGggaaCGCCg -3' miRNA: 3'- ucCGCuuGGCCGGCCcgGCGCa---GCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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