miRNA display CGI


Results 21 - 40 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24099 3' -64.8 NC_005262.1 + 5979 0.68 0.223516
Target:  5'- cGGCuuuuGCCGGCCGGcuGCUGCucGUUGCUc -3'
miRNA:   3'- uCCGcu--UGGCCGGCC--CGGCG--CAGCGG- -5'
24099 3' -64.8 NC_005262.1 + 6633 0.68 0.240275
Target:  5'- cGGCGAggggucGCCGGggaugucgaCCGacacGGCCGCGauguacUCGCCg -3'
miRNA:   3'- uCCGCU------UGGCC---------GGC----CCGGCGC------AGCGG- -5'
24099 3' -64.8 NC_005262.1 + 6877 0.73 0.107198
Target:  5'- cGGCGAuGCCGGCCGcGaucgcguuuucgaGCCGCGU-GCCc -3'
miRNA:   3'- uCCGCU-UGGCCGGC-C-------------CGGCGCAgCGG- -5'
24099 3' -64.8 NC_005262.1 + 7156 0.69 0.212904
Target:  5'- cAGGCGAAacacCCGGCCGcauGCCGCuacCGCg -3'
miRNA:   3'- -UCCGCUU----GGCCGGCc--CGGCGca-GCGg -5'
24099 3' -64.8 NC_005262.1 + 8231 0.77 0.054
Target:  5'- -uGCGAGCCGGCCGGGUCGa--UGCCc -3'
miRNA:   3'- ucCGCUUGGCCGGCCCGGCgcaGCGG- -5'
24099 3' -64.8 NC_005262.1 + 8261 0.68 0.234011
Target:  5'- -cGCGAAagcagCGGCCGaGGaagcugcCCGCGUCGCUc -3'
miRNA:   3'- ucCGCUUg----GCCGGC-CC-------GGCGCAGCGG- -5'
24099 3' -64.8 NC_005262.1 + 8949 0.66 0.317905
Target:  5'- uGaCGAGCCGGUCGGcgcGCUGCGU-GUCg -3'
miRNA:   3'- uCcGCUUGGCCGGCC---CGGCGCAgCGG- -5'
24099 3' -64.8 NC_005262.1 + 9127 0.69 0.212904
Target:  5'- cGGCuaugaGGACCGgcGCCGGGCCG-GUCGg- -3'
miRNA:   3'- uCCG-----CUUGGC--CGGCCCGGCgCAGCgg -5'
24099 3' -64.8 NC_005262.1 + 9179 0.66 0.31077
Target:  5'- cGGCGGACCacgaGCCGaGCCGCGagUUGUa -3'
miRNA:   3'- uCCGCUUGGc---CGGCcCGGCGC--AGCGg -5'
24099 3' -64.8 NC_005262.1 + 9781 0.66 0.303757
Target:  5'- uAGGCGAGCaGGUU--GCCGUGcuUCGCCg -3'
miRNA:   3'- -UCCGCUUGgCCGGccCGGCGC--AGCGG- -5'
24099 3' -64.8 NC_005262.1 + 10090 0.7 0.17912
Target:  5'- cGGCcuucGACgCGGCCGGGUucUGCG-CGCCc -3'
miRNA:   3'- uCCGc---UUG-GCCGGCCCG--GCGCaGCGG- -5'
24099 3' -64.8 NC_005262.1 + 10639 0.66 0.325162
Target:  5'- aGGGCGggUU-GCCGaucGCCGCGUCGa- -3'
miRNA:   3'- -UCCGCuuGGcCGGCc--CGGCGCAGCgg -5'
24099 3' -64.8 NC_005262.1 + 10768 0.69 0.212904
Target:  5'- uGGUGAuccgcCCGcGCCGGGCgCGCGguacUGCUg -3'
miRNA:   3'- uCCGCUu----GGC-CGGCCCG-GCGCa---GCGG- -5'
24099 3' -64.8 NC_005262.1 + 10979 0.66 0.317905
Target:  5'- cGGCGcGCCGGgaaCGccGGUCGCGcUCGCa -3'
miRNA:   3'- uCCGCuUGGCCg--GC--CCGGCGC-AGCGg -5'
24099 3' -64.8 NC_005262.1 + 11411 0.67 0.274992
Target:  5'- aAGcCGcGCCGcGCCGGGCCGCcgaaggugcgcgacaCGCCg -3'
miRNA:   3'- -UCcGCuUGGC-CGGCCCGGCGca-------------GCGG- -5'
24099 3' -64.8 NC_005262.1 + 11483 0.76 0.061732
Target:  5'- -cGCGAGCaca-UGGGCCGCGUCGCCg -3'
miRNA:   3'- ucCGCUUGgccgGCCCGGCGCAGCGG- -5'
24099 3' -64.8 NC_005262.1 + 11634 0.67 0.270521
Target:  5'- cGGCGucgaGGCCGGGguaguugCGCGcCGCCu -3'
miRNA:   3'- uCCGCuuggCCGGCCCg------GCGCaGCGG- -5'
24099 3' -64.8 NC_005262.1 + 11895 0.73 0.11031
Target:  5'- cGGCGAAgCGGUCGGuGCCguucggcgGCGUCGgCu -3'
miRNA:   3'- uCCGCUUgGCCGGCC-CGG--------CGCAGCgG- -5'
24099 3' -64.8 NC_005262.1 + 12262 0.71 0.149798
Target:  5'- -cGCGAGCCGGUCGccguguugcgcacGGUCGUcUCGCCg -3'
miRNA:   3'- ucCGCUUGGCCGGC-------------CCGGCGcAGCGG- -5'
24099 3' -64.8 NC_005262.1 + 12416 0.71 0.139127
Target:  5'- cAGGCGcGGCCuuGGCCGGcGUCGCGgacggCGCg -3'
miRNA:   3'- -UCCGC-UUGG--CCGGCC-CGGCGCa----GCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.