miRNA display CGI


Results 1 - 20 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24099 3' -64.8 NC_005262.1 + 108 0.68 0.260521
Target:  5'- -uGCGcaugucACCGGCCGGcgaccgaccuccauaGCagaaaGCGUCGCCg -3'
miRNA:   3'- ucCGCu-----UGGCCGGCC---------------CGg----CGCAGCGG- -5'
24099 3' -64.8 NC_005262.1 + 909 0.69 0.212904
Target:  5'- cGGCGcGCUGG-CGGGUgaugGUGUCGCCc -3'
miRNA:   3'- uCCGCuUGGCCgGCCCGg---CGCAGCGG- -5'
24099 3' -64.8 NC_005262.1 + 945 0.66 0.309357
Target:  5'- cGGGCGugccauccucguACCGcgucgaGCCGuGGCCGaucgucggcaCGUCGCCu -3'
miRNA:   3'- -UCCGCu-----------UGGC------CGGC-CCGGC----------GCAGCGG- -5'
24099 3' -64.8 NC_005262.1 + 987 0.67 0.283452
Target:  5'- uGGCGAccuGCgGGgCGGGgCGguguagagcuUGUCGCCg -3'
miRNA:   3'- uCCGCU---UGgCCgGCCCgGC----------GCAGCGG- -5'
24099 3' -64.8 NC_005262.1 + 1913 0.66 0.332543
Target:  5'- gGGGCGGAg-GGUgCGGGuuGCGUgGCUc -3'
miRNA:   3'- -UCCGCUUggCCG-GCCCggCGCAgCGG- -5'
24099 3' -64.8 NC_005262.1 + 2543 0.66 0.347669
Target:  5'- --aCGAACUGGCCcaGGCCGCcgguguagGUgCGCCa -3'
miRNA:   3'- uccGCUUGGCCGGc-CCGGCG--------CA-GCGG- -5'
24099 3' -64.8 NC_005262.1 + 2647 0.66 0.31077
Target:  5'- cGGCccauGCCugcgcggcGCCGGGCgGCGUCcugGCCg -3'
miRNA:   3'- uCCGcu--UGGc-------CGGCCCGgCGCAG---CGG- -5'
24099 3' -64.8 NC_005262.1 + 3590 0.66 0.31077
Target:  5'- uGcCGAccucGCCGGCCGGcuccuuGCCG-GUUGCCg -3'
miRNA:   3'- uCcGCU----UGGCCGGCC------CGGCgCAGCGG- -5'
24099 3' -64.8 NC_005262.1 + 3989 0.67 0.264235
Target:  5'- uGGCGccuGCgGGCCGGuGCCcucgaggaacGCGUUGaCCu -3'
miRNA:   3'- uCCGCu--UGgCCGGCC-CGG----------CGCAGC-GG- -5'
24099 3' -64.8 NC_005262.1 + 4125 0.67 0.283452
Target:  5'- -cGCGAaaGCCGGgcauaaaaaaaCGGcGCCGCGUggCGCCg -3'
miRNA:   3'- ucCGCU--UGGCCg----------GCC-CGGCGCA--GCGG- -5'
24099 3' -64.8 NC_005262.1 + 4329 0.69 0.192976
Target:  5'- cGGCGAGCCucgCGGGCCGUccaucggccGUCGCg -3'
miRNA:   3'- uCCGCUUGGccgGCCCGGCG---------CAGCGg -5'
24099 3' -64.8 NC_005262.1 + 4663 0.7 0.162022
Target:  5'- cGGCGAcgCGGCCcGGCCGguUCGCCu -3'
miRNA:   3'- uCCGCUugGCCGGcCCGGCgcAGCGG- -5'
24099 3' -64.8 NC_005262.1 + 4682 0.68 0.252021
Target:  5'- -cGCG-GCCGGaUCGGGCCGCGgcauccaGUCg -3'
miRNA:   3'- ucCGCuUGGCC-GGCCCGGCGCag-----CGG- -5'
24099 3' -64.8 NC_005262.1 + 4795 0.67 0.276926
Target:  5'- cGGGaucgGAGCCGGCCGcGuaGCGcugguuUCGCCg -3'
miRNA:   3'- -UCCg---CUUGGCCGGCcCggCGC------AGCGG- -5'
24099 3' -64.8 NC_005262.1 + 4837 0.74 0.084668
Target:  5'- cGGCG-GCCGGCUGGuucgacuGCUGCG-CGCCg -3'
miRNA:   3'- uCCGCuUGGCCGGCC-------CGGCGCaGCGG- -5'
24099 3' -64.8 NC_005262.1 + 4875 0.68 0.252021
Target:  5'- aAGcGCGcgccAUCGGUCGGGCCGCcg-GCCu -3'
miRNA:   3'- -UC-CGCu---UGGCCGGCCCGGCGcagCGG- -5'
24099 3' -64.8 NC_005262.1 + 5081 0.69 0.202727
Target:  5'- cGGCGcgugcGACCGGCUcGGCgGUGcgCGCCc -3'
miRNA:   3'- uCCGC-----UUGGCCGGcCCGgCGCa-GCGG- -5'
24099 3' -64.8 NC_005262.1 + 5171 0.69 0.197799
Target:  5'- cGGUGA--CGGCCGGcGUCGCGggCGCg -3'
miRNA:   3'- uCCGCUugGCCGGCC-CGGCGCa-GCGg -5'
24099 3' -64.8 NC_005262.1 + 5366 0.68 0.24609
Target:  5'- gGGGCGuccuuGACgGGCagggaCGcGGCCGUGUCGUg -3'
miRNA:   3'- -UCCGC-----UUGgCCG-----GC-CCGGCGCAGCGg -5'
24099 3' -64.8 NC_005262.1 + 5508 0.75 0.080525
Target:  5'- -cGCGAcgACCGGaCCGGGaUCGuCGUCGCCc -3'
miRNA:   3'- ucCGCU--UGGCC-GGCCC-GGC-GCAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.