Results 1 - 20 of 171 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24099 | 3' | -64.8 | NC_005262.1 | + | 16872 | 0.7 | 0.17912 |
Target: 5'- cAGGCGcccGGCCGcgcGCCGGGCCGCaccacacCGCa -3' miRNA: 3'- -UCCGC---UUGGC---CGGCCCGGCGca-----GCGg -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 30095 | 0.72 | 0.119234 |
Target: 5'- aGGGCGAcgacacGCCGGCC--GCCGCGaaGCCc -3' miRNA: 3'- -UCCGCU------UGGCCGGccCGGCGCagCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 49725 | 0.72 | 0.119234 |
Target: 5'- cGGCGAACCGGCgGccgaaGCCGCaccgaCGCCg -3' miRNA: 3'- uCCGCUUGGCCGgCc----CGGCGca---GCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 61169 | 0.72 | 0.119234 |
Target: 5'- cGGGCGAGCUGa-CGGGCgCGCGgCGCUa -3' miRNA: 3'- -UCCGCUUGGCcgGCCCG-GCGCaGCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 63657 | 0.72 | 0.128826 |
Target: 5'- cGGGCGAACUGGCUGGaauuGCCgGCGaCGgCg -3' miRNA: 3'- -UCCGCUUGGCCGGCC----CGG-CGCaGCgG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 21343 | 0.72 | 0.132179 |
Target: 5'- gAGGCGAucgaGgCGGCCaaGGCCGCG-CGCa -3' miRNA: 3'- -UCCGCU----UgGCCGGc-CCGGCGCaGCGg -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 34005 | 0.72 | 0.135612 |
Target: 5'- gGGcGCGGACgGcgugacGCCGGGCCGCaucGUgCGCCg -3' miRNA: 3'- -UC-CGCUUGgC------CGGCCCGGCG---CA-GCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 52700 | 0.71 | 0.146409 |
Target: 5'- aAGGCc-GCCGGCCGacgccggacgaGGCCGCGcUGCUg -3' miRNA: 3'- -UCCGcuUGGCCGGC-----------CCGGCGCaGCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 35829 | 0.7 | 0.17912 |
Target: 5'- uGGGcCGGAgCGGCguCGGcGCCGCGacCGCCc -3' miRNA: 3'- -UCC-GCUUgGCCG--GCC-CGGCGCa-GCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 6877 | 0.73 | 0.107198 |
Target: 5'- cGGCGAuGCCGGCCGcGaucgcguuuucgaGCCGCGU-GCCc -3' miRNA: 3'- uCCGCU-UGGCCGGC-C-------------CGGCGCAgCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 57483 | 0.73 | 0.104713 |
Target: 5'- aGGGCGAgaaGCCGGCCGacgaGGCgccgaaguucaGCGUCGCg -3' miRNA: 3'- -UCCGCU---UGGCCGGC----CCGg----------CGCAGCGg -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 5508 | 0.75 | 0.080525 |
Target: 5'- -cGCGAcgACCGGaCCGGGaUCGuCGUCGCCc -3' miRNA: 3'- ucCGCU--UGGCC-GGCCC-GGC-GCAGCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 47692 | 0.79 | 0.040051 |
Target: 5'- cGGCGGucugacgccaagcACCGcGCCGGGCgGCGgcUCGCCg -3' miRNA: 3'- uCCGCU-------------UGGC-CGGCCCGgCGC--AGCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 43835 | 0.77 | 0.055467 |
Target: 5'- -cGCGGGCCGGCCGcGcGCgGCGgugCGCCg -3' miRNA: 3'- ucCGCUUGGCCGGC-C-CGgCGCa--GCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 60492 | 0.76 | 0.061732 |
Target: 5'- aGGGCGAGac-GCCGGGCCGCGcggCGCa -3' miRNA: 3'- -UCCGCUUggcCGGCCCGGCGCa--GCGg -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 11483 | 0.76 | 0.061732 |
Target: 5'- -cGCGAGCaca-UGGGCCGCGUCGCCg -3' miRNA: 3'- ucCGCUUGgccgGCCCGGCGCAGCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 17687 | 0.76 | 0.066874 |
Target: 5'- cGGCGAagaaGCCGGCCGuGGUCGC-UgGCCc -3' miRNA: 3'- uCCGCU----UGGCCGGC-CCGGCGcAgCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 23409 | 0.76 | 0.066874 |
Target: 5'- cGGCGAugCGGCgGGcagcaugaGCCGCGUCaucgaGCCg -3' miRNA: 3'- uCCGCUugGCCGgCC--------CGGCGCAG-----CGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 28427 | 0.75 | 0.070529 |
Target: 5'- gAGGuCGAAUCgGGCCGcGCCGUGcUCGCCg -3' miRNA: 3'- -UCC-GCUUGG-CCGGCcCGGCGC-AGCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 42980 | 0.75 | 0.074376 |
Target: 5'- uGGCuGAaaACCGcGCCGGGCCGCuUCGUg -3' miRNA: 3'- uCCG-CU--UGGC-CGGCCCGGCGcAGCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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