miRNA display CGI


Results 1 - 20 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24099 3' -64.8 NC_005262.1 + 59130 1.11 0.000132
Target:  5'- gAGGCGAACCGGCCGGGCCGCGUCGCCg -3'
miRNA:   3'- -UCCGCUUGGCCGGCCCGGCGCAGCGG- -5'
24099 3' -64.8 NC_005262.1 + 19969 0.81 0.024642
Target:  5'- -cGCGcGGCCGGcCCGcGGCCGUGUCGCCg -3'
miRNA:   3'- ucCGC-UUGGCC-GGC-CCGGCGCAGCGG- -5'
24099 3' -64.8 NC_005262.1 + 47692 0.79 0.040051
Target:  5'- cGGCGGucugacgccaagcACCGcGCCGGGCgGCGgcUCGCCg -3'
miRNA:   3'- uCCGCU-------------UGGC-CGGCCCGgCGC--AGCGG- -5'
24099 3' -64.8 NC_005262.1 + 8231 0.77 0.054
Target:  5'- -uGCGAGCCGGCCGGGUCGa--UGCCc -3'
miRNA:   3'- ucCGCUUGGCCGGCCCGGCgcaGCGG- -5'
24099 3' -64.8 NC_005262.1 + 43835 0.77 0.055467
Target:  5'- -cGCGGGCCGGCCGcGcGCgGCGgugCGCCg -3'
miRNA:   3'- ucCGCUUGGCCGGC-C-CGgCGCa--GCGG- -5'
24099 3' -64.8 NC_005262.1 + 39943 0.76 0.060104
Target:  5'- cGGGCGGcACCGGCaaGGGCgGCGU-GCCg -3'
miRNA:   3'- -UCCGCU-UGGCCGg-CCCGgCGCAgCGG- -5'
24099 3' -64.8 NC_005262.1 + 11483 0.76 0.061732
Target:  5'- -cGCGAGCaca-UGGGCCGCGUCGCCg -3'
miRNA:   3'- ucCGCUUGgccgGCCCGGCGCAGCGG- -5'
24099 3' -64.8 NC_005262.1 + 60492 0.76 0.061732
Target:  5'- aGGGCGAGac-GCCGGGCCGCGcggCGCa -3'
miRNA:   3'- -UCCGCUUggcCGGCCCGGCGCa--GCGg -5'
24099 3' -64.8 NC_005262.1 + 17687 0.76 0.066874
Target:  5'- cGGCGAagaaGCCGGCCGuGGUCGC-UgGCCc -3'
miRNA:   3'- uCCGCU----UGGCCGGC-CCGGCGcAgCGG- -5'
24099 3' -64.8 NC_005262.1 + 23409 0.76 0.066874
Target:  5'- cGGCGAugCGGCgGGcagcaugaGCCGCGUCaucgaGCCg -3'
miRNA:   3'- uCCGCUugGCCGgCC--------CGGCGCAG-----CGG- -5'
24099 3' -64.8 NC_005262.1 + 19106 0.76 0.068496
Target:  5'- cGGCGAugCcacguucggaucgGGCgCGGG-CGCGUCGCCg -3'
miRNA:   3'- uCCGCUugG-------------CCG-GCCCgGCGCAGCGG- -5'
24099 3' -64.8 NC_005262.1 + 28427 0.75 0.070529
Target:  5'- gAGGuCGAAUCgGGCCGcGCCGUGcUCGCCg -3'
miRNA:   3'- -UCC-GCUUGG-CCGGCcCGGCGC-AGCGG- -5'
24099 3' -64.8 NC_005262.1 + 42980 0.75 0.074376
Target:  5'- uGGCuGAaaACCGcGCCGGGCCGCuUCGUg -3'
miRNA:   3'- uCCG-CU--UGGC-CGGCCCGGCGcAGCGg -5'
24099 3' -64.8 NC_005262.1 + 5508 0.75 0.080525
Target:  5'- -cGCGAcgACCGGaCCGGGaUCGuCGUCGCCc -3'
miRNA:   3'- ucCGCU--UGGCC-GGCCC-GGC-GCAGCGG- -5'
24099 3' -64.8 NC_005262.1 + 47404 0.75 0.080525
Target:  5'- cGGCG-GCCGGCCGGGgCGgGUucaaaacugguUGCCg -3'
miRNA:   3'- uCCGCuUGGCCGGCCCgGCgCA-----------GCGG- -5'
24099 3' -64.8 NC_005262.1 + 4837 0.74 0.084668
Target:  5'- cGGCG-GCCGGCUGGuucgacuGCUGCG-CGCCg -3'
miRNA:   3'- uCCGCuUGGCCGGCC-------CGGCGCaGCGG- -5'
24099 3' -64.8 NC_005262.1 + 57483 0.73 0.104713
Target:  5'- aGGGCGAgaaGCCGGCCGacgaGGCgccgaaguucaGCGUCGCg -3'
miRNA:   3'- -UCCGCU---UGGCCGGC----CCGg----------CGCAGCGg -5'
24099 3' -64.8 NC_005262.1 + 30931 0.73 0.105811
Target:  5'- cGGCGAACgcuCGGCgccgcacgugCGGGCCGaaaccuugucgccgaCGUCGCCg -3'
miRNA:   3'- uCCGCUUG---GCCG----------GCCCGGC---------------GCAGCGG- -5'
24099 3' -64.8 NC_005262.1 + 6877 0.73 0.107198
Target:  5'- cGGCGAuGCCGGCCGcGaucgcguuuucgaGCCGCGU-GCCc -3'
miRNA:   3'- uCCGCU-UGGCCGGC-C-------------CGGCGCAgCGG- -5'
24099 3' -64.8 NC_005262.1 + 11895 0.73 0.11031
Target:  5'- cGGCGAAgCGGUCGGuGCCguucggcgGCGUCGgCu -3'
miRNA:   3'- uCCGCUUgGCCGGCC-CGG--------CGCAGCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.