Results 1 - 20 of 171 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24099 | 3' | -64.8 | NC_005262.1 | + | 42375 | 0.66 | 0.310063 |
Target: 5'- gAGGUGAACUGGCa-GGCCGgacagacCGUCaCCc -3' miRNA: 3'- -UCCGCUUGGCCGgcCCGGC-------GCAGcGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 27547 | 0.66 | 0.317186 |
Target: 5'- aGGGCGAGcucagccCCGGCgaGGacGCCGCGcagCGCg -3' miRNA: 3'- -UCCGCUU-------GGCCGg-CC--CGGCGCa--GCGg -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 2647 | 0.66 | 0.31077 |
Target: 5'- cGGCccauGCCugcgcggcGCCGGGCgGCGUCcugGCCg -3' miRNA: 3'- uCCGcu--UGGc-------CGGCCCGgCGCAG---CGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 45411 | 0.66 | 0.317905 |
Target: 5'- cAGGC-AGCCgcgcaaaacucGGCCGGGCUuauggGCGggcucggaaccaUCGCCg -3' miRNA: 3'- -UCCGcUUGG-----------CCGGCCCGG-----CGC------------AGCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 58566 | 0.66 | 0.306548 |
Target: 5'- cGGCGAgaagcugaucggcacGCCGGCauggaauGGGCUGaUGgggCGCCu -3' miRNA: 3'- uCCGCU---------------UGGCCGg------CCCGGC-GCa--GCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 51543 | 0.66 | 0.303757 |
Target: 5'- cGGCG-ACCGGCuCGcguaccacguGGUCGCG-CGCg -3' miRNA: 3'- uCCGCuUGGCCG-GC----------CCGGCGCaGCGg -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 49193 | 0.66 | 0.317186 |
Target: 5'- cGGCGAugaucuccggcauGCUGGCCgaGGGCgGCcUCGgCg -3' miRNA: 3'- uCCGCU-------------UGGCCGG--CCCGgCGcAGCgG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 60152 | 0.66 | 0.303757 |
Target: 5'- uGGGCGAAguacCCGGCC--GCCGUGaaggCGCUc -3' miRNA: 3'- -UCCGCUU----GGCCGGccCGGCGCa---GCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 16973 | 0.66 | 0.320793 |
Target: 5'- cGGGCaccGAuauugcccugcugccGCCGGCCGaGCgCGCGcUCGUCg -3' miRNA: 3'- -UCCG---CU---------------UGGCCGGCcCG-GCGC-AGCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 48475 | 0.66 | 0.332543 |
Target: 5'- -cGCGAGCCgcgugGGCaCGGGCgGCGcgacggcaGCCg -3' miRNA: 3'- ucCGCUUGG-----CCG-GCCCGgCGCag------CGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 51110 | 0.66 | 0.312898 |
Target: 5'- aAGGCGAucgugcucgacgcGCCGGUCGacaaggcgcucgacGCCGUgaagaaGUCGCCg -3' miRNA: 3'- -UCCGCU-------------UGGCCGGCc-------------CGGCG------CAGCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 22233 | 0.66 | 0.317905 |
Target: 5'- cGGCcGcgccgcccacGCCGGCCGGcCUGCGcaucacgccgUCGCCa -3' miRNA: 3'- uCCGcU----------UGGCCGGCCcGGCGC----------AGCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 58952 | 0.66 | 0.320793 |
Target: 5'- cGGCGcgcagcagucgaaccAGCCGGCCGccGGCgGCcucaCGCCu -3' miRNA: 3'- uCCGC---------------UUGGCCGGC--CCGgCGca--GCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 42151 | 0.66 | 0.332543 |
Target: 5'- cGGCGccgggcCCGGUCGcGGCCGa-UCGUCu -3' miRNA: 3'- uCCGCuu----GGCCGGC-CCGGCgcAGCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 1913 | 0.66 | 0.332543 |
Target: 5'- gGGGCGGAg-GGUgCGGGuuGCGUgGCUc -3' miRNA: 3'- -UCCGCUUggCCG-GCCCggCGCAgCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 48685 | 0.66 | 0.317905 |
Target: 5'- cAGcGCGuuCCaGCCGGacGCCGCGcCGCa -3' miRNA: 3'- -UC-CGCuuGGcCGGCC--CGGCGCaGCGg -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 60191 | 0.66 | 0.340045 |
Target: 5'- uGGGCGGcaACCGGCaaggagccGGCCgGCGagGUCg -3' miRNA: 3'- -UCCGCU--UGGCCGgc------CCGG-CGCagCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 33739 | 0.66 | 0.303757 |
Target: 5'- aAGGCGaAGCUcGCCgaaGGcGCUGCGUaaCGCCa -3' miRNA: 3'- -UCCGC-UUGGcCGG---CC-CGGCGCA--GCGG- -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 51195 | 0.66 | 0.339289 |
Target: 5'- cGGCG-GCCcGCUGGaGCCGCGcgggcgaugcugaUCGCa -3' miRNA: 3'- uCCGCuUGGcCGGCC-CGGCGC-------------AGCGg -5' |
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24099 | 3' | -64.8 | NC_005262.1 | + | 10979 | 0.66 | 0.317905 |
Target: 5'- cGGCGcGCCGGgaaCGccGGUCGCGcUCGCa -3' miRNA: 3'- uCCGCuUGGCCg--GC--CCGGCGC-AGCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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