Results 41 - 50 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24099 | 5' | -53.9 | NC_005262.1 | + | 35221 | 0.71 | 0.541655 |
Target: 5'- -aAGGAUGCGGAGGucggcggcgcgaucGGCAGCggCugGGc -3' miRNA: 3'- ccUCCUGCGCUUCU--------------UCGUCGa-GugCC- -5' |
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24099 | 5' | -53.9 | NC_005262.1 | + | 15827 | 0.72 | 0.492786 |
Target: 5'- gGGAGaGGCGCG-AGAGGUcGUUCGCGc -3' miRNA: 3'- -CCUC-CUGCGCuUCUUCGuCGAGUGCc -5' |
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24099 | 5' | -53.9 | NC_005262.1 | + | 64 | 0.72 | 0.482645 |
Target: 5'- gGGAGGccgcggcuCGCGAAGAAGuCGGC-CGCGc -3' miRNA: 3'- -CCUCCu-------GCGCUUCUUC-GUCGaGUGCc -5' |
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24099 | 5' | -53.9 | NC_005262.1 | + | 17546 | 0.73 | 0.452851 |
Target: 5'- cGGucGcGCGCGAGGcGGCAGC-CGCGGc -3' miRNA: 3'- -CCucC-UGCGCUUCuUCGUCGaGUGCC- -5' |
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24099 | 5' | -53.9 | NC_005262.1 | + | 367 | 0.73 | 0.452851 |
Target: 5'- -uGGGugGCGAGGAugucagcgAGCAGCcCGCGa -3' miRNA: 3'- ccUCCugCGCUUCU--------UCGUCGaGUGCc -5' |
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24099 | 5' | -53.9 | NC_005262.1 | + | 32296 | 0.73 | 0.443143 |
Target: 5'- --cGGGCGCGAAcgucGAGGCAGCgcgugcgcuguUCAUGGg -3' miRNA: 3'- ccuCCUGCGCUU----CUUCGUCG-----------AGUGCC- -5' |
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24099 | 5' | -53.9 | NC_005262.1 | + | 61434 | 0.73 | 0.433554 |
Target: 5'- cGAGGAauuccacguCGCGAAGAAgGCGGCggACGGc -3' miRNA: 3'- cCUCCU---------GCGCUUCUU-CGUCGagUGCC- -5' |
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24099 | 5' | -53.9 | NC_005262.1 | + | 10869 | 0.74 | 0.396444 |
Target: 5'- uGAGGGCGCGGuaauGGguGC-CACGGg -3' miRNA: 3'- cCUCCUGCGCUucu-UCguCGaGUGCC- -5' |
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24099 | 5' | -53.9 | NC_005262.1 | + | 36177 | 0.77 | 0.263088 |
Target: 5'- aGGAGG-CGCGAGu--GCAGCUCgACGGc -3' miRNA: 3'- -CCUCCuGCGCUUcuuCGUCGAG-UGCC- -5' |
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24099 | 5' | -53.9 | NC_005262.1 | + | 59164 | 1.14 | 0.000923 |
Target: 5'- uGGAGGACGCGAAGAAGCAGCUCACGGg -3' miRNA: 3'- -CCUCCUGCGCUUCUUCGUCGAGUGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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