Results 21 - 40 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24099 | 5' | -53.9 | NC_005262.1 | + | 25735 | 0.68 | 0.717426 |
Target: 5'- cGAGGcgauCGCGcAGGccGGCAagccGCUCACGGc -3' miRNA: 3'- cCUCCu---GCGCuUCU--UCGU----CGAGUGCC- -5' |
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24099 | 5' | -53.9 | NC_005262.1 | + | 28946 | 0.66 | 0.859743 |
Target: 5'- uGAGGgucaugugcucgcGCGCGAGGAAGUcggggAGCUgAuCGGc -3' miRNA: 3'- cCUCC-------------UGCGCUUCUUCG-----UCGAgU-GCC- -5' |
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24099 | 5' | -53.9 | NC_005262.1 | + | 32296 | 0.73 | 0.443143 |
Target: 5'- --cGGGCGCGAAcgucGAGGCAGCgcgugcgcuguUCAUGGg -3' miRNA: 3'- ccuCCUGCGCUU----CUUCGUCG-----------AGUGCC- -5' |
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24099 | 5' | -53.9 | NC_005262.1 | + | 35221 | 0.71 | 0.541655 |
Target: 5'- -aAGGAUGCGGAGGucggcggcgcgaucGGCAGCggCugGGc -3' miRNA: 3'- ccUCCUGCGCUUCU--------------UCGUCGa-GugCC- -5' |
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24099 | 5' | -53.9 | NC_005262.1 | + | 36177 | 0.77 | 0.263088 |
Target: 5'- aGGAGG-CGCGAGu--GCAGCUCgACGGc -3' miRNA: 3'- -CCUCCuGCGCUUcuuCGUCGAG-UGCC- -5' |
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24099 | 5' | -53.9 | NC_005262.1 | + | 37885 | 0.67 | 0.788757 |
Target: 5'- cGGAGGcACGgGcGGGAAGUauGGUggCGCGGg -3' miRNA: 3'- -CCUCC-UGCgC-UUCUUCG--UCGa-GUGCC- -5' |
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24099 | 5' | -53.9 | NC_005262.1 | + | 40519 | 0.7 | 0.63115 |
Target: 5'- gGGGcGGGCGUGAAGAAGCG----ACGGg -3' miRNA: 3'- -CCU-CCUGCGCUUCUUCGUcgagUGCC- -5' |
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24099 | 5' | -53.9 | NC_005262.1 | + | 40598 | 0.67 | 0.788757 |
Target: 5'- uGAcGGugGCGcAGAugccGCAGCauaaUCACGGc -3' miRNA: 3'- cCU-CCugCGCuUCUu---CGUCG----AGUGCC- -5' |
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24099 | 5' | -53.9 | NC_005262.1 | + | 43326 | 0.68 | 0.738385 |
Target: 5'- aGGAGGAagcCGCuGAAcAGGCGGCgaucgaCGCGGc -3' miRNA: 3'- -CCUCCU---GCG-CUUcUUCGUCGa-----GUGCC- -5' |
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24099 | 5' | -53.9 | NC_005262.1 | + | 43577 | 0.66 | 0.860557 |
Target: 5'- --uGGGCgcuGCGAuuGAGGCGGCUUugGa -3' miRNA: 3'- ccuCCUG---CGCUu-CUUCGUCGAGugCc -5' |
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24099 | 5' | -53.9 | NC_005262.1 | + | 44913 | 0.67 | 0.769011 |
Target: 5'- gGGAcuGGAUGCGGcgcaAGgcGCuGCUC-CGGa -3' miRNA: 3'- -CCU--CCUGCGCU----UCuuCGuCGAGuGCC- -5' |
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24099 | 5' | -53.9 | NC_005262.1 | + | 47643 | 0.69 | 0.662689 |
Target: 5'- cGGAGGacaagaaGCGCGAGGcgaucGAGCAGgaCAUGa -3' miRNA: 3'- -CCUCC-------UGCGCUUC-----UUCGUCgaGUGCc -5' |
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24099 | 5' | -53.9 | NC_005262.1 | + | 49154 | 0.7 | 0.630061 |
Target: 5'- cGGuGGGCGUGcAGGccgcaucggccgcAGCGGCgcgCACGGc -3' miRNA: 3'- -CCuCCUGCGCuUCU-------------UCGUCGa--GUGCC- -5' |
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24099 | 5' | -53.9 | NC_005262.1 | + | 49853 | 0.67 | 0.788757 |
Target: 5'- cGGugccGGCgGCGGuaccGGAAGCAGCUCAgcCGGc -3' miRNA: 3'- -CCuc--CUG-CGCU----UCUUCGUCGAGU--GCC- -5' |
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24099 | 5' | -53.9 | NC_005262.1 | + | 50455 | 0.7 | 0.642037 |
Target: 5'- ----cGCGCGAGGAGGaCGGCcgCACGGu -3' miRNA: 3'- ccuccUGCGCUUCUUC-GUCGa-GUGCC- -5' |
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24099 | 5' | -53.9 | NC_005262.1 | + | 51195 | 0.66 | 0.829835 |
Target: 5'- gGGAGGGCGCGcucauccgcgAcgccucgccggcggcAGcAGCAGCUCgACGa -3' miRNA: 3'- -CCUCCUGCGC----------U---------------UCuUCGUCGAG-UGCc -5' |
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24099 | 5' | -53.9 | NC_005262.1 | + | 52413 | 0.71 | 0.587703 |
Target: 5'- uGGAGGcgauCGCGGAGgcGCGGCaaagCGCa- -3' miRNA: 3'- -CCUCCu---GCGCUUCuuCGUCGa---GUGcc -5' |
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24099 | 5' | -53.9 | NC_005262.1 | + | 52708 | 0.66 | 0.841255 |
Target: 5'- cGGccGACGcCGGAcGAGGCcgcgcugcugacgaAGUUCACGGg -3' miRNA: 3'- -CCucCUGC-GCUU-CUUCG--------------UCGAGUGCC- -5' |
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24099 | 5' | -53.9 | NC_005262.1 | + | 52972 | 0.67 | 0.768009 |
Target: 5'- cGGcGGACGCGcaugcgcuGGucgugaucgucgcGGCAGCUCGCGc -3' miRNA: 3'- -CCuCCUGCGCuu------CU-------------UCGUCGAGUGCc -5' |
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24099 | 5' | -53.9 | NC_005262.1 | + | 53468 | 0.69 | 0.706817 |
Target: 5'- cGAGGACaacgGCGu-GAAGUGGCUCggcACGGc -3' miRNA: 3'- cCUCCUG----CGCuuCUUCGUCGAG---UGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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