miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24099 5' -53.9 NC_005262.1 + 64 0.72 0.482645
Target:  5'- gGGAGGccgcggcuCGCGAAGAAGuCGGC-CGCGc -3'
miRNA:   3'- -CCUCCu-------GCGCUUCUUC-GUCGaGUGCc -5'
24099 5' -53.9 NC_005262.1 + 367 0.73 0.452851
Target:  5'- -uGGGugGCGAGGAugucagcgAGCAGCcCGCGa -3'
miRNA:   3'- ccUCCugCGCUUCU--------UCGUCGaGUGCc -5'
24099 5' -53.9 NC_005262.1 + 1917 0.67 0.798395
Target:  5'- cGGAGGGUGCGGGuuGcGUGGCUCGCuGGu -3'
miRNA:   3'- -CCUCCUGCGCUUcuU-CGUCGAGUG-CC- -5'
24099 5' -53.9 NC_005262.1 + 9468 0.67 0.807864
Target:  5'- cGAGGugccgaGCGCGucGAugacguccuGGCGGCUCAUGu -3'
miRNA:   3'- cCUCC------UGCGCuuCU---------UCGUCGAGUGCc -5'
24099 5' -53.9 NC_005262.1 + 9683 0.66 0.852311
Target:  5'- cGAGGGCGCcgucgacgucGAGgcGCAGCa-GCGGg -3'
miRNA:   3'- cCUCCUGCGc---------UUCuuCGUCGagUGCC- -5'
24099 5' -53.9 NC_005262.1 + 10461 0.66 0.817153
Target:  5'- --cGGuCgGCGAGGuAGCGGCgcgCGCGGu -3'
miRNA:   3'- ccuCCuG-CGCUUCuUCGUCGa--GUGCC- -5'
24099 5' -53.9 NC_005262.1 + 10627 0.66 0.860557
Target:  5'- cGAcGGACGCGAAG-GGCGGgUUGCc- -3'
miRNA:   3'- cCU-CCUGCGCUUCuUCGUCgAGUGcc -5'
24099 5' -53.9 NC_005262.1 + 10869 0.74 0.396444
Target:  5'- uGAGGGCGCGGuaauGGguGC-CACGGg -3'
miRNA:   3'- cCUCCUGCGCUucu-UCguCGaGUGCC- -5'
24099 5' -53.9 NC_005262.1 + 12820 0.7 0.63115
Target:  5'- --cGGcGCGUGAAGAAggagcGCGGCcUCGCGGg -3'
miRNA:   3'- ccuCC-UGCGCUUCUU-----CGUCG-AGUGCC- -5'
24099 5' -53.9 NC_005262.1 + 13792 0.66 0.843839
Target:  5'- cGGuGGGCGCc--GgcGCGGCUUcaucgGCGGg -3'
miRNA:   3'- -CCuCCUGCGcuuCuuCGUCGAG-----UGCC- -5'
24099 5' -53.9 NC_005262.1 + 15586 0.68 0.758926
Target:  5'- uGGAGGcgcgcgcGCGCGAGGAGcgcguGCGGCaggagcgcaucgaggCGCGGc -3'
miRNA:   3'- -CCUCC-------UGCGCUUCUU-----CGUCGa--------------GUGCC- -5'
24099 5' -53.9 NC_005262.1 + 15827 0.72 0.492786
Target:  5'- gGGAGaGGCGCG-AGAGGUcGUUCGCGc -3'
miRNA:   3'- -CCUC-CUGCGCuUCUUCGuCGAGUGCc -5'
24099 5' -53.9 NC_005262.1 + 16542 0.66 0.817153
Target:  5'- cGAaGAUGCGAAGccGCucccGUUCACGGc -3'
miRNA:   3'- cCUcCUGCGCUUCuuCGu---CGAGUGCC- -5'
24099 5' -53.9 NC_005262.1 + 16598 0.7 0.609388
Target:  5'- uGGucGAgGCGgcGAAGCAGC-CGCGu -3'
miRNA:   3'- -CCucCUgCGCuuCUUCGUCGaGUGCc -5'
24099 5' -53.9 NC_005262.1 + 17312 0.66 0.82535
Target:  5'- aGGAGGAagcagacCGC-AAGGAGCgcgAGCgcgUCGCGGc -3'
miRNA:   3'- -CCUCCU-------GCGcUUCUUCG---UCG---AGUGCC- -5'
24099 5' -53.9 NC_005262.1 + 17546 0.73 0.452851
Target:  5'- cGGucGcGCGCGAGGcGGCAGC-CGCGGc -3'
miRNA:   3'- -CCucC-UGCGCUUCuUCGUCGaGUGCC- -5'
24099 5' -53.9 NC_005262.1 + 17586 0.66 0.852311
Target:  5'- cGAGGAgaaGCuGgcGgcGCAGCgCGCGGa -3'
miRNA:   3'- cCUCCUg--CG-CuuCuuCGUCGaGUGCC- -5'
24099 5' -53.9 NC_005262.1 + 21530 0.68 0.717426
Target:  5'- --cGGAaGCGGu---GCAGCUCGCGGu -3'
miRNA:   3'- ccuCCUgCGCUucuuCGUCGAGUGCC- -5'
24099 5' -53.9 NC_005262.1 + 24327 0.66 0.826251
Target:  5'- uGGucGGCGCGAucGAcauGCGGCUCugcguCGGc -3'
miRNA:   3'- -CCucCUGCGCUu-CUu--CGUCGAGu----GCC- -5'
24099 5' -53.9 NC_005262.1 + 24916 0.71 0.576911
Target:  5'- cGGAGGACGcCGAGGcauGGCGGgaUGCGc -3'
miRNA:   3'- -CCUCCUGC-GCUUCu--UCGUCgaGUGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.