Results 1 - 20 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24099 | 5' | -53.9 | NC_005262.1 | + | 61641 | 0.68 | 0.727953 |
Target: 5'- cGAGGGCGagGAGGAAGU-GCUguacCGCGGc -3' miRNA: 3'- cCUCCUGCg-CUUCUUCGuCGA----GUGCC- -5' |
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24099 | 5' | -53.9 | NC_005262.1 | + | 49154 | 0.7 | 0.630061 |
Target: 5'- cGGuGGGCGUGcAGGccgcaucggccgcAGCGGCgcgCACGGc -3' miRNA: 3'- -CCuCCUGCGCuUCU-------------UCGUCGa--GUGCC- -5' |
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24099 | 5' | -53.9 | NC_005262.1 | + | 12820 | 0.7 | 0.63115 |
Target: 5'- --cGGcGCGUGAAGAAggagcGCGGCcUCGCGGg -3' miRNA: 3'- ccuCC-UGCGCUUCUU-----CGUCG-AGUGCC- -5' |
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24099 | 5' | -53.9 | NC_005262.1 | + | 50455 | 0.7 | 0.642037 |
Target: 5'- ----cGCGCGAGGAGGaCGGCcgCACGGu -3' miRNA: 3'- ccuccUGCGCUUCUUC-GUCGa-GUGCC- -5' |
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24099 | 5' | -53.9 | NC_005262.1 | + | 47643 | 0.69 | 0.662689 |
Target: 5'- cGGAGGacaagaaGCGCGAGGcgaucGAGCAGgaCAUGa -3' miRNA: 3'- -CCUCC-------UGCGCUUC-----UUCGUCgaGUGCc -5' |
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24099 | 5' | -53.9 | NC_005262.1 | + | 56716 | 0.69 | 0.685395 |
Target: 5'- uGGAGGACGUGuccGAGGCgucGGCguucgaCAUGGc -3' miRNA: 3'- -CCUCCUGCGCuu-CUUCG---UCGa-----GUGCC- -5' |
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24099 | 5' | -53.9 | NC_005262.1 | + | 53468 | 0.69 | 0.706817 |
Target: 5'- cGAGGACaacgGCGu-GAAGUGGCUCggcACGGc -3' miRNA: 3'- cCUCCUG----CGCuuCUUCGUCGAG---UGCC- -5' |
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24099 | 5' | -53.9 | NC_005262.1 | + | 21530 | 0.68 | 0.717426 |
Target: 5'- --cGGAaGCGGu---GCAGCUCGCGGu -3' miRNA: 3'- ccuCCUgCGCUucuuCGUCGAGUGCC- -5' |
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24099 | 5' | -53.9 | NC_005262.1 | + | 25735 | 0.68 | 0.717426 |
Target: 5'- cGAGGcgauCGCGcAGGccGGCAagccGCUCACGGc -3' miRNA: 3'- cCUCCu---GCGCuUCU--UCGU----CGAGUGCC- -5' |
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24099 | 5' | -53.9 | NC_005262.1 | + | 16598 | 0.7 | 0.609388 |
Target: 5'- uGGucGAgGCGgcGAAGCAGC-CGCGu -3' miRNA: 3'- -CCucCUgCGCuuCUUCGUCGaGUGCc -5' |
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24099 | 5' | -53.9 | NC_005262.1 | + | 53920 | 0.7 | 0.602871 |
Target: 5'- ---cGACGCGcuGAAGCaggcgcagcucgaccAGCUCACGGa -3' miRNA: 3'- ccucCUGCGCuuCUUCG---------------UCGAGUGCC- -5' |
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24099 | 5' | -53.9 | NC_005262.1 | + | 52413 | 0.71 | 0.587703 |
Target: 5'- uGGAGGcgauCGCGGAGgcGCGGCaaagCGCa- -3' miRNA: 3'- -CCUCCu---GCGCUUCuuCGUCGa---GUGcc -5' |
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24099 | 5' | -53.9 | NC_005262.1 | + | 10869 | 0.74 | 0.396444 |
Target: 5'- uGAGGGCGCGGuaauGGguGC-CACGGg -3' miRNA: 3'- cCUCCUGCGCUucu-UCguCGaGUGCC- -5' |
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24099 | 5' | -53.9 | NC_005262.1 | + | 61434 | 0.73 | 0.433554 |
Target: 5'- cGAGGAauuccacguCGCGAAGAAgGCGGCggACGGc -3' miRNA: 3'- cCUCCU---------GCGCUUCUU-CGUCGagUGCC- -5' |
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24099 | 5' | -53.9 | NC_005262.1 | + | 32296 | 0.73 | 0.443143 |
Target: 5'- --cGGGCGCGAAcgucGAGGCAGCgcgugcgcuguUCAUGGg -3' miRNA: 3'- ccuCCUGCGCUU----CUUCGUCG-----------AGUGCC- -5' |
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24099 | 5' | -53.9 | NC_005262.1 | + | 367 | 0.73 | 0.452851 |
Target: 5'- -uGGGugGCGAGGAugucagcgAGCAGCcCGCGa -3' miRNA: 3'- ccUCCugCGCUUCU--------UCGUCGaGUGCc -5' |
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24099 | 5' | -53.9 | NC_005262.1 | + | 17546 | 0.73 | 0.452851 |
Target: 5'- cGGucGcGCGCGAGGcGGCAGC-CGCGGc -3' miRNA: 3'- -CCucC-UGCGCUUCuUCGUCGaGUGCC- -5' |
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24099 | 5' | -53.9 | NC_005262.1 | + | 64 | 0.72 | 0.482645 |
Target: 5'- gGGAGGccgcggcuCGCGAAGAAGuCGGC-CGCGc -3' miRNA: 3'- -CCUCCu-------GCGCUUCUUC-GUCGaGUGCc -5' |
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24099 | 5' | -53.9 | NC_005262.1 | + | 35221 | 0.71 | 0.541655 |
Target: 5'- -aAGGAUGCGGAGGucggcggcgcgaucGGCAGCggCugGGc -3' miRNA: 3'- ccUCCUGCGCUUCU--------------UCGUCGa-GugCC- -5' |
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24099 | 5' | -53.9 | NC_005262.1 | + | 24916 | 0.71 | 0.576911 |
Target: 5'- cGGAGGACGcCGAGGcauGGCGGgaUGCGc -3' miRNA: 3'- -CCUCCUGC-GCUUCu--UCGUCgaGUGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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