Results 21 - 40 of 54 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24100 | 3' | -55.9 | NC_005262.1 | + | 23466 | 0.72 | 0.348158 |
Target: 5'- gCGCgGCCUGGACgaauggcugggcgaGGUUcgcccgcugacgccCGAGGAGCUGCg -3' miRNA: 3'- -GUG-CGGACUUG--------------UCGA--------------GCUCCUCGACG- -5' |
|||||||
24100 | 3' | -55.9 | NC_005262.1 | + | 26323 | 0.72 | 0.370174 |
Target: 5'- --aGCCcGaAGCAgauGCUCGAGGAGCUGa -3' miRNA: 3'- gugCGGaC-UUGU---CGAGCUCCUCGACg -5' |
|||||||
24100 | 3' | -55.9 | NC_005262.1 | + | 24440 | 0.72 | 0.378892 |
Target: 5'- aACGCCUGAGCcGUcacgcccgaUCGAuGGcGCUGCa -3' miRNA: 3'- gUGCGGACUUGuCG---------AGCU-CCuCGACG- -5' |
|||||||
24100 | 3' | -55.9 | NC_005262.1 | + | 48605 | 0.7 | 0.453374 |
Target: 5'- --gGCCUGcaaucGCAGCUCGAcgaGGAGgaGCc -3' miRNA: 3'- gugCGGACu----UGUCGAGCU---CCUCgaCG- -5' |
|||||||
24100 | 3' | -55.9 | NC_005262.1 | + | 56545 | 0.7 | 0.453374 |
Target: 5'- -cCGUC-GAGCAGCgCGAGGGGC-GCa -3' miRNA: 3'- guGCGGaCUUGUCGaGCUCCUCGaCG- -5' |
|||||||
24100 | 3' | -55.9 | NC_005262.1 | + | 54445 | 0.7 | 0.453374 |
Target: 5'- gCGCGCCgaccgGAAguauCAGCgcaacgUCGAGGcGCUGCu -3' miRNA: 3'- -GUGCGGa----CUU----GUCG------AGCUCCuCGACG- -5' |
|||||||
24100 | 3' | -55.9 | NC_005262.1 | + | 13797 | 0.67 | 0.665129 |
Target: 5'- gGCGCCgGcGCGGCuucaUCGgcGGGAGCggGCg -3' miRNA: 3'- gUGCGGaCuUGUCG----AGC--UCCUCGa-CG- -5' |
|||||||
24100 | 3' | -55.9 | NC_005262.1 | + | 12433 | 0.67 | 0.643319 |
Target: 5'- gGCGUCgcGGACGGCgcggUGccGAGCUGCa -3' miRNA: 3'- gUGCGGa-CUUGUCGa---GCucCUCGACG- -5' |
|||||||
24100 | 3' | -55.9 | NC_005262.1 | + | 47227 | 0.67 | 0.632394 |
Target: 5'- aCGCGCCUGcuCGGCauccgCGgccgugaacGGGAGCgGCu -3' miRNA: 3'- -GUGCGGACuuGUCGa----GC---------UCCUCGaCG- -5' |
|||||||
24100 | 3' | -55.9 | NC_005262.1 | + | 40356 | 0.67 | 0.632394 |
Target: 5'- uGCGCCagucgucGGACGGCUCGAuGAcgcggcucauGCUGCc -3' miRNA: 3'- gUGCGGa------CUUGUCGAGCUcCU----------CGACG- -5' |
|||||||
24100 | 3' | -55.9 | NC_005262.1 | + | 51215 | 0.67 | 0.621469 |
Target: 5'- gACGCCUcgccggcggcaGcAGCAGCUCGAcGAGCgccGCc -3' miRNA: 3'- gUGCGGA-----------C-UUGUCGAGCUcCUCGa--CG- -5' |
|||||||
24100 | 3' | -55.9 | NC_005262.1 | + | 646 | 0.67 | 0.610552 |
Target: 5'- aGCGCUUGuuCGGUUugccguugaCGAGGGuGCUGCa -3' miRNA: 3'- gUGCGGACuuGUCGA---------GCUCCU-CGACG- -5' |
|||||||
24100 | 3' | -55.9 | NC_005262.1 | + | 58909 | 0.66 | 0.675994 |
Target: 5'- uCACGCCgaAGCAGgUCGAgucggcgcucGGcaAGCUGCg -3' miRNA: 3'- -GUGCGGacUUGUCgAGCU----------CC--UCGACG- -5' |
|||||||
24100 | 3' | -55.9 | NC_005262.1 | + | 41066 | 0.66 | 0.683575 |
Target: 5'- uCGCGCCUccuuCGGCUCGucGAGCauccagucgauccaUGCg -3' miRNA: 3'- -GUGCGGAcuu-GUCGAGCucCUCG--------------ACG- -5' |
|||||||
24100 | 3' | -55.9 | NC_005262.1 | + | 61156 | 0.66 | 0.685737 |
Target: 5'- cCGCGCaggcaUGGGCcgaucuggucaagGGUaUCGAGGAGCUGg -3' miRNA: 3'- -GUGCGg----ACUUG-------------UCG-AGCUCCUCGACg -5' |
|||||||
24100 | 3' | -55.9 | NC_005262.1 | + | 45060 | 0.66 | 0.686817 |
Target: 5'- aCGCGCC-GAGCcgcgccgaAGCU-GAGGAGC-GCc -3' miRNA: 3'- -GUGCGGaCUUG--------UCGAgCUCCUCGaCG- -5' |
|||||||
24100 | 3' | -55.9 | NC_005262.1 | + | 36181 | 0.66 | 0.708299 |
Target: 5'- gGCGCgaGuGCAGCUCGAcGGccuguucGCUGUc -3' miRNA: 3'- gUGCGgaCuUGUCGAGCU-CCu------CGACG- -5' |
|||||||
24100 | 3' | -55.9 | NC_005262.1 | + | 48688 | 0.66 | 0.708299 |
Target: 5'- cCACGCCUucAgGGCgUCGGGuuucGAGUUGCc -3' miRNA: 3'- -GUGCGGAcuUgUCG-AGCUC----CUCGACG- -5' |
|||||||
24100 | 3' | -55.9 | NC_005262.1 | + | 28962 | 0.66 | 0.708299 |
Target: 5'- gCGCGCgaGGA-AG-UCGGGGAGCUGa -3' miRNA: 3'- -GUGCGgaCUUgUCgAGCUCCUCGACg -5' |
|||||||
24100 | 3' | -55.9 | NC_005262.1 | + | 46742 | 0.76 | 0.197491 |
Target: 5'- gGCGCCgUGcgcgcGACgAGCUCGcGGAGCUGCu -3' miRNA: 3'- gUGCGG-AC-----UUG-UCGAGCuCCUCGACG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home