miRNA display CGI


Results 1 - 20 of 54 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24100 3' -55.9 NC_005262.1 + 15496 0.66 0.686817
Target:  5'- aGCGC---GGCGGCUCGcucaccGGcGAGCUGCa -3'
miRNA:   3'- gUGCGgacUUGUCGAGC------UC-CUCGACG- -5'
24100 3' -55.9 NC_005262.1 + 8258 0.7 0.463238
Target:  5'- gCGCGCgaaAGCAGCggcCGAGGAaGCUGCc -3'
miRNA:   3'- -GUGCGgacUUGUCGa--GCUCCU-CGACG- -5'
24100 3' -55.9 NC_005262.1 + 13025 0.68 0.588785
Target:  5'- gCGCGCCaagGGcuacGCGGUgcgCGucGAGCUGCg -3'
miRNA:   3'- -GUGCGGa--CU----UGUCGa--GCucCUCGACG- -5'
24100 3' -55.9 NC_005262.1 + 30856 0.67 0.632394
Target:  5'- gACGUCggGAugACGGC-CGAGGAGUcGCc -3'
miRNA:   3'- gUGCGGa-CU--UGUCGaGCUCCUCGaCG- -5'
24100 3' -55.9 NC_005262.1 + 26031 0.67 0.636765
Target:  5'- cUACGCCc-AGCAGCUCGccgcggcgcgcaagcAGGGGC-GCa -3'
miRNA:   3'- -GUGCGGacUUGUCGAGC---------------UCCUCGaCG- -5'
24100 3' -55.9 NC_005262.1 + 52459 0.67 0.665129
Target:  5'- gACGCagggGAacccGCAGUaCGAGGAGCaGCc -3'
miRNA:   3'- gUGCGga--CU----UGUCGaGCUCCUCGaCG- -5'
24100 3' -55.9 NC_005262.1 + 43452 0.67 0.665129
Target:  5'- aCGCGCUUGuGCGGaUCGAGucGAGCcGCu -3'
miRNA:   3'- -GUGCGGACuUGUCgAGCUC--CUCGaCG- -5'
24100 3' -55.9 NC_005262.1 + 21673 0.66 0.675994
Target:  5'- aCGCGCaacCUGAGCGGCggCGccGcGCUGCu -3'
miRNA:   3'- -GUGCG---GACUUGUCGa-GCucCuCGACG- -5'
24100 3' -55.9 NC_005262.1 + 33496 0.66 0.675994
Target:  5'- uCGgGCCUGAc--GCUCGAGGA-CUGg -3'
miRNA:   3'- -GUgCGGACUuguCGAGCUCCUcGACg -5'
24100 3' -55.9 NC_005262.1 + 54445 0.7 0.453374
Target:  5'- gCGCGCCgaccgGAAguauCAGCgcaacgUCGAGGcGCUGCu -3'
miRNA:   3'- -GUGCGGa----CUU----GUCG------AGCUCCuCGACG- -5'
24100 3' -55.9 NC_005262.1 + 56545 0.7 0.453374
Target:  5'- -cCGUC-GAGCAGCgCGAGGGGC-GCa -3'
miRNA:   3'- guGCGGaCUUGUCGaGCUCCUCGaCG- -5'
24100 3' -55.9 NC_005262.1 + 48605 0.7 0.453374
Target:  5'- --gGCCUGcaaucGCAGCUCGAcgaGGAGgaGCc -3'
miRNA:   3'- gugCGGACu----UGUCGAGCU---CCUCgaCG- -5'
24100 3' -55.9 NC_005262.1 + 49517 0.82 0.0863
Target:  5'- -uCGCCgaGGGCcuGCUCGAGGAGCUGCc -3'
miRNA:   3'- guGCGGa-CUUGu-CGAGCUCCUCGACG- -5'
24100 3' -55.9 NC_005262.1 + 61624 0.79 0.120939
Target:  5'- gCGCGCCUGAAgGaGCUCGAGGGcgaggaggaaguGCUGUa -3'
miRNA:   3'- -GUGCGGACUUgU-CGAGCUCCU------------CGACG- -5'
24100 3' -55.9 NC_005262.1 + 55403 0.76 0.197491
Target:  5'- aGCGCCgcaucGAGCAGCUCGAGcGccGGCUGg -3'
miRNA:   3'- gUGCGGa----CUUGUCGAGCUC-C--UCGACg -5'
24100 3' -55.9 NC_005262.1 + 49033 0.75 0.225267
Target:  5'- gACGCCUGGAaggacuggcgUAGCuauUCGAGcGGGCUGCu -3'
miRNA:   3'- gUGCGGACUU----------GUCG---AGCUC-CUCGACG- -5'
24100 3' -55.9 NC_005262.1 + 29402 0.72 0.344855
Target:  5'- aCGCGCUcgcGAucGCGacGCUCGAGGAGCaGCa -3'
miRNA:   3'- -GUGCGGa--CU--UGU--CGAGCUCCUCGaCG- -5'
24100 3' -55.9 NC_005262.1 + 23466 0.72 0.348158
Target:  5'- gCGCgGCCUGGACgaauggcugggcgaGGUUcgcccgcugacgccCGAGGAGCUGCg -3'
miRNA:   3'- -GUG-CGGACUUG--------------UCGA--------------GCUCCUCGACG- -5'
24100 3' -55.9 NC_005262.1 + 26323 0.72 0.370174
Target:  5'- --aGCCcGaAGCAgauGCUCGAGGAGCUGa -3'
miRNA:   3'- gugCGGaC-UUGU---CGAGCUCCUCGACg -5'
24100 3' -55.9 NC_005262.1 + 24440 0.72 0.378892
Target:  5'- aACGCCUGAGCcGUcacgcccgaUCGAuGGcGCUGCa -3'
miRNA:   3'- gUGCGGACUUGuCG---------AGCU-CCuCGACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.