miRNA display CGI


Results 1 - 20 of 54 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24100 3' -55.9 NC_005262.1 + 646 0.67 0.610552
Target:  5'- aGCGCUUGuuCGGUUugccguugaCGAGGGuGCUGCa -3'
miRNA:   3'- gUGCGGACuuGUCGA---------GCUCCU-CGACG- -5'
24100 3' -55.9 NC_005262.1 + 4901 0.71 0.391325
Target:  5'- --gGCCUGAucgcGCAGCgCGGcagcagccaacgcgcGGAGCUGCg -3'
miRNA:   3'- gugCGGACU----UGUCGaGCU---------------CCUCGACG- -5'
24100 3' -55.9 NC_005262.1 + 8258 0.7 0.463238
Target:  5'- gCGCGCgaaAGCAGCggcCGAGGAaGCUGCc -3'
miRNA:   3'- -GUGCGgacUUGUCGa--GCUCCU-CGACG- -5'
24100 3' -55.9 NC_005262.1 + 9854 0.69 0.493478
Target:  5'- aCGCGCCauccGugAGCUgGucGAGCUGCg -3'
miRNA:   3'- -GUGCGGac--UugUCGAgCucCUCGACG- -5'
24100 3' -55.9 NC_005262.1 + 12433 0.67 0.643319
Target:  5'- gGCGUCgcGGACGGCgcggUGccGAGCUGCa -3'
miRNA:   3'- gUGCGGa-CUUGUCGa---GCucCUCGACG- -5'
24100 3' -55.9 NC_005262.1 + 13025 0.68 0.588785
Target:  5'- gCGCGCCaagGGcuacGCGGUgcgCGucGAGCUGCg -3'
miRNA:   3'- -GUGCGGa--CU----UGUCGa--GCucCUCGACG- -5'
24100 3' -55.9 NC_005262.1 + 13207 0.71 0.414178
Target:  5'- uCGCGCUaccggguUGAGCGGCagCGGGcucGGGCUGCg -3'
miRNA:   3'- -GUGCGG-------ACUUGUCGa-GCUC---CUCGACG- -5'
24100 3' -55.9 NC_005262.1 + 13797 0.67 0.665129
Target:  5'- gGCGCCgGcGCGGCuucaUCGgcGGGAGCggGCg -3'
miRNA:   3'- gUGCGGaCuUGUCG----AGC--UCCUCGa-CG- -5'
24100 3' -55.9 NC_005262.1 + 15127 0.68 0.57795
Target:  5'- aACGCgCUGGccgGCAGCUUGucGAGCUccuGCu -3'
miRNA:   3'- gUGCG-GACU---UGUCGAGCucCUCGA---CG- -5'
24100 3' -55.9 NC_005262.1 + 15496 0.66 0.686817
Target:  5'- aGCGC---GGCGGCUCGcucaccGGcGAGCUGCa -3'
miRNA:   3'- gUGCGgacUUGUCGAGC------UC-CUCGACG- -5'
24100 3' -55.9 NC_005262.1 + 15721 0.71 0.424491
Target:  5'- gGCGCC-GGGCGGCUCGucgcGGcAGgUGCg -3'
miRNA:   3'- gUGCGGaCUUGUCGAGCu---CC-UCgACG- -5'
24100 3' -55.9 NC_005262.1 + 18078 0.68 0.556421
Target:  5'- gAUGCC-GAACuGCUCGAucacGGccGGCUGCc -3'
miRNA:   3'- gUGCGGaCUUGuCGAGCU----CC--UCGACG- -5'
24100 3' -55.9 NC_005262.1 + 21673 0.66 0.675994
Target:  5'- aCGCGCaacCUGAGCGGCggCGccGcGCUGCu -3'
miRNA:   3'- -GUGCG---GACUUGUCGa-GCucCuCGACG- -5'
24100 3' -55.9 NC_005262.1 + 23061 0.66 0.729486
Target:  5'- aCGCGCCgccGCccguGCUCGAGG-GCgucaGCg -3'
miRNA:   3'- -GUGCGGacuUGu---CGAGCUCCuCGa---CG- -5'
24100 3' -55.9 NC_005262.1 + 23466 0.72 0.348158
Target:  5'- gCGCgGCCUGGACgaauggcugggcgaGGUUcgcccgcugacgccCGAGGAGCUGCg -3'
miRNA:   3'- -GUG-CGGACUUG--------------UCGA--------------GCUCCUCGACG- -5'
24100 3' -55.9 NC_005262.1 + 24440 0.72 0.378892
Target:  5'- aACGCCUGAGCcGUcacgcccgaUCGAuGGcGCUGCa -3'
miRNA:   3'- gUGCGGACUUGuCG---------AGCU-CCuCGACG- -5'
24100 3' -55.9 NC_005262.1 + 26031 0.67 0.636765
Target:  5'- cUACGCCc-AGCAGCUCGccgcggcgcgcaagcAGGGGC-GCa -3'
miRNA:   3'- -GUGCGGacUUGUCGAGC---------------UCCUCGaCG- -5'
24100 3' -55.9 NC_005262.1 + 26323 0.72 0.370174
Target:  5'- --aGCCcGaAGCAgauGCUCGAGGAGCUGa -3'
miRNA:   3'- gugCGGaC-UUGU---CGAGCUCCUCGACg -5'
24100 3' -55.9 NC_005262.1 + 28101 0.68 0.57147
Target:  5'- gACGCCgGAGCGgaugcuuccgugcccGCUCGAcgugagcacGAGCUGCg -3'
miRNA:   3'- gUGCGGaCUUGU---------------CGAGCUc--------CUCGACG- -5'
24100 3' -55.9 NC_005262.1 + 28898 0.68 0.556421
Target:  5'- aACGUCUGcuucGGCAGCaUGAGGAuGCUcGCg -3'
miRNA:   3'- gUGCGGAC----UUGUCGaGCUCCU-CGA-CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.