miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24100 3' -55.9 NC_005262.1 + 59224 1.11 0.000633
Target:  5'- aCACGCCUGAACAGCUCGAGGAGCUGCu -3'
miRNA:   3'- -GUGCGGACUUGUCGAGCUCCUCGACG- -5'
24100 3' -55.9 NC_005262.1 + 49517 0.82 0.0863
Target:  5'- -uCGCCgaGGGCcuGCUCGAGGAGCUGCc -3'
miRNA:   3'- guGCGGa-CUUGu-CGAGCUCCUCGACG- -5'
24100 3' -55.9 NC_005262.1 + 61624 0.79 0.120939
Target:  5'- gCGCGCCUGAAgGaGCUCGAGGGcgaggaggaaguGCUGUa -3'
miRNA:   3'- -GUGCGGACUUgU-CGAGCUCCU------------CGACG- -5'
24100 3' -55.9 NC_005262.1 + 46742 0.76 0.197491
Target:  5'- gGCGCCgUGcgcgcGACgAGCUCGcGGAGCUGCu -3'
miRNA:   3'- gUGCGG-AC-----UUG-UCGAGCuCCUCGACG- -5'
24100 3' -55.9 NC_005262.1 + 56089 0.76 0.197491
Target:  5'- aGCGCaaGAuGCAGCUCGAGGAGgCgGCg -3'
miRNA:   3'- gUGCGgaCU-UGUCGAGCUCCUC-GaCG- -5'
24100 3' -55.9 NC_005262.1 + 55403 0.76 0.197491
Target:  5'- aGCGCCgcaucGAGCAGCUCGAGcGccGGCUGg -3'
miRNA:   3'- gUGCGGa----CUUGUCGAGCUC-C--UCGACg -5'
24100 3' -55.9 NC_005262.1 + 49033 0.75 0.225267
Target:  5'- gACGCCUGGAaggacuggcgUAGCuauUCGAGcGGGCUGCu -3'
miRNA:   3'- gUGCGGACUU----------GUCG---AGCUC-CUCGACG- -5'
24100 3' -55.9 NC_005262.1 + 29402 0.72 0.344855
Target:  5'- aCGCGCUcgcGAucGCGacGCUCGAGGAGCaGCa -3'
miRNA:   3'- -GUGCGGa--CU--UGU--CGAGCUCCUCGaCG- -5'
24100 3' -55.9 NC_005262.1 + 23466 0.72 0.348158
Target:  5'- gCGCgGCCUGGACgaauggcugggcgaGGUUcgcccgcugacgccCGAGGAGCUGCg -3'
miRNA:   3'- -GUG-CGGACUUG--------------UCGA--------------GCUCCUCGACG- -5'
24100 3' -55.9 NC_005262.1 + 26323 0.72 0.370174
Target:  5'- --aGCCcGaAGCAgauGCUCGAGGAGCUGa -3'
miRNA:   3'- gugCGGaC-UUGU---CGAGCUCCUCGACg -5'
24100 3' -55.9 NC_005262.1 + 24440 0.72 0.378892
Target:  5'- aACGCCUGAGCcGUcacgcccgaUCGAuGGcGCUGCa -3'
miRNA:   3'- gUGCGGACUUGuCG---------AGCU-CCuCGACG- -5'
24100 3' -55.9 NC_005262.1 + 4901 0.71 0.391325
Target:  5'- --gGCCUGAucgcGCAGCgCGGcagcagccaacgcgcGGAGCUGCg -3'
miRNA:   3'- gugCGGACU----UGUCGaGCU---------------CCUCGACG- -5'
24100 3' -55.9 NC_005262.1 + 43216 0.71 0.405857
Target:  5'- gCGCGCCgcgcGCuGCUCGccGGGCUGCu -3'
miRNA:   3'- -GUGCGGacu-UGuCGAGCucCUCGACG- -5'
24100 3' -55.9 NC_005262.1 + 13207 0.71 0.414178
Target:  5'- uCGCGCUaccggguUGAGCGGCagCGGGcucGGGCUGCg -3'
miRNA:   3'- -GUGCGG-------ACUUGUCGa-GCUC---CUCGACG- -5'
24100 3' -55.9 NC_005262.1 + 15721 0.71 0.424491
Target:  5'- gGCGCC-GGGCGGCUCGucgcGGcAGgUGCg -3'
miRNA:   3'- gUGCGGaCUUGUCGAGCu---CC-UCgACG- -5'
24100 3' -55.9 NC_005262.1 + 43135 0.71 0.433997
Target:  5'- uGCGCCUGGAUcug-UGAGGAGCcgGCa -3'
miRNA:   3'- gUGCGGACUUGucgaGCUCCUCGa-CG- -5'
24100 3' -55.9 NC_005262.1 + 54445 0.7 0.453374
Target:  5'- gCGCGCCgaccgGAAguauCAGCgcaacgUCGAGGcGCUGCu -3'
miRNA:   3'- -GUGCGGa----CUU----GUCG------AGCUCCuCGACG- -5'
24100 3' -55.9 NC_005262.1 + 56545 0.7 0.453374
Target:  5'- -cCGUC-GAGCAGCgCGAGGGGC-GCa -3'
miRNA:   3'- guGCGGaCUUGUCGaGCUCCUCGaCG- -5'
24100 3' -55.9 NC_005262.1 + 48605 0.7 0.453374
Target:  5'- --gGCCUGcaaucGCAGCUCGAcgaGGAGgaGCc -3'
miRNA:   3'- gugCGGACu----UGUCGAGCU---CCUCgaCG- -5'
24100 3' -55.9 NC_005262.1 + 8258 0.7 0.463238
Target:  5'- gCGCGCgaaAGCAGCggcCGAGGAaGCUGCc -3'
miRNA:   3'- -GUGCGgacUUGUCGa--GCUCCU-CGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.