miRNA display CGI


Results 41 - 60 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24100 5' -56.5 NC_005262.1 + 8208 0.67 0.58857
Target:  5'- gCAGCGaugaucCGCGCGGGccaugagcugucGGCGAAGCucgaagccGAGCGc -3'
miRNA:   3'- -GUCGU------GCGCGUCC------------UCGCUUUG--------CUCGC- -5'
24100 5' -56.5 NC_005262.1 + 56945 0.67 0.58857
Target:  5'- -cGCACGCcgauccGCGcGGGCGAGuucGCGGGCGu -3'
miRNA:   3'- guCGUGCG------CGUcCUCGCUU---UGCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 57476 0.67 0.58857
Target:  5'- gCGGCGgGCGCcgacgAGaGGCGGccGGCGAGCGc -3'
miRNA:   3'- -GUCGUgCGCG-----UCcUCGCU--UUGCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 57625 0.67 0.58857
Target:  5'- -cGCGagGCGCAGGAGCGcguGACGAu-- -3'
miRNA:   3'- guCGUg-CGCGUCCUCGCu--UUGCUcgc -5'
24100 5' -56.5 NC_005262.1 + 18139 0.68 0.58104
Target:  5'- aAGCGCuGCGCcucaaccGGGAGCGcGugcccgccugaucgcGCGAGCGc -3'
miRNA:   3'- gUCGUG-CGCG-------UCCUCGCuU---------------UGCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 29455 0.68 0.57782
Target:  5'- gCGGCAgagGCGCAGGucGcCGAGGCGAagGCGa -3'
miRNA:   3'- -GUCGUg--CGCGUCCu-C-GCUUUGCU--CGC- -5'
24100 5' -56.5 NC_005262.1 + 26050 0.68 0.57782
Target:  5'- gCGGCGCGCaaGCAGGGGCGcauCaAGCc -3'
miRNA:   3'- -GUCGUGCG--CGUCCUCGCuuuGcUCGc -5'
24100 5' -56.5 NC_005262.1 + 36808 0.68 0.57782
Target:  5'- gCGGCGCGCuCGGcGGGCGuGAGCGAuGCc -3'
miRNA:   3'- -GUCGUGCGcGUC-CUCGC-UUUGCU-CGc -5'
24100 5' -56.5 NC_005262.1 + 42254 0.68 0.57782
Target:  5'- gAGCGcCGCGCucacuGCGGcGACGAGCGg -3'
miRNA:   3'- gUCGU-GCGCGuccu-CGCU-UUGCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 57271 0.68 0.574603
Target:  5'- cCAGCuCGCGCAGcucacggcccgcguGcAGCaGAACGAGCGc -3'
miRNA:   3'- -GUCGuGCGCGUC--------------C-UCGcUUUGCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 61914 0.68 0.567114
Target:  5'- aGGCACGgGCAauGGGGCGGAugGcuucaccuacGCGa -3'
miRNA:   3'- gUCGUGCgCGU--CCUCGCUUugCu---------CGC- -5'
24100 5' -56.5 NC_005262.1 + 26179 0.68 0.556459
Target:  5'- uGGCGCGCGauccgauucaAGGAagGCuGggGCGAGCc -3'
miRNA:   3'- gUCGUGCGCg---------UCCU--CG-CuuUGCUCGc -5'
24100 5' -56.5 NC_005262.1 + 35341 0.68 0.556459
Target:  5'- -uGCAUGCGCAucaucGGCGAcacGGCGAGCa -3'
miRNA:   3'- guCGUGCGCGUcc---UCGCU---UUGCUCGc -5'
24100 5' -56.5 NC_005262.1 + 46804 0.68 0.556459
Target:  5'- gAGCGCGCGCucGGccGGCGGcAGCaGGGCa -3'
miRNA:   3'- gUCGUGCGCGu-CC--UCGCU-UUG-CUCGc -5'
24100 5' -56.5 NC_005262.1 + 59541 0.68 0.545863
Target:  5'- aAGCGCGCaauggGCcacgAGGAGCGcGAgGAGCa -3'
miRNA:   3'- gUCGUGCG-----CG----UCCUCGCuUUgCUCGc -5'
24100 5' -56.5 NC_005262.1 + 49239 0.68 0.544807
Target:  5'- gCAGUccGCGCGCgAGGuccGCGAccagaucAACGAGCu -3'
miRNA:   3'- -GUCG--UGCGCG-UCCu--CGCU-------UUGCUCGc -5'
24100 5' -56.5 NC_005262.1 + 5277 0.68 0.535332
Target:  5'- gCAGCACGgGCAGG-GCGGucGACuGGUu -3'
miRNA:   3'- -GUCGUGCgCGUCCuCGCU--UUGcUCGc -5'
24100 5' -56.5 NC_005262.1 + 27996 0.68 0.535332
Target:  5'- -cGCAgGUGCAGGAcgagaacgacgGCGAGccgaucuacGCGGGCGc -3'
miRNA:   3'- guCGUgCGCGUCCU-----------CGCUU---------UGCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 63053 0.68 0.535332
Target:  5'- cCAGCAUGCGCcGGcacgucaucgcgGGCGAGuauGCG-GCGg -3'
miRNA:   3'- -GUCGUGCGCGuCC------------UCGCUU---UGCuCGC- -5'
24100 5' -56.5 NC_005262.1 + 12819 0.68 0.535332
Target:  5'- cCGGCGCGUGaagaAGGAGCGcgGCcucGCGg -3'
miRNA:   3'- -GUCGUGCGCg---UCCUCGCuuUGcu-CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.