miRNA display CGI


Results 21 - 40 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24100 5' -56.5 NC_005262.1 + 12819 0.68 0.535332
Target:  5'- cCGGCGCGUGaagaAGGAGCGcgGCcucGCGg -3'
miRNA:   3'- -GUCGUGCGCg---UCCUCGCuuUGcu-CGC- -5'
24100 5' -56.5 NC_005262.1 + 13012 0.75 0.215599
Target:  5'- -uGUACGCGCAGGAGCGcgccaaGGGCu -3'
miRNA:   3'- guCGUGCGCGUCCUCGCuuug--CUCGc -5'
24100 5' -56.5 NC_005262.1 + 13392 0.69 0.504198
Target:  5'- gGGCGCGCGCAuccacGAGCuccgcgaGAGCGGGCa -3'
miRNA:   3'- gUCGUGCGCGUc----CUCGc------UUUGCUCGc -5'
24100 5' -56.5 NC_005262.1 + 13708 0.66 0.675103
Target:  5'- -cGCGCgGCGCGGGuuCGGucGGCGcAGCGg -3'
miRNA:   3'- guCGUG-CGCGUCCucGCU--UUGC-UCGC- -5'
24100 5' -56.5 NC_005262.1 + 13796 0.66 0.653508
Target:  5'- gGGCGCcgGCGCGGcuucaucGGCgGGAGCGGGCGc -3'
miRNA:   3'- gUCGUG--CGCGUCc------UCG-CUUUGCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 15594 0.74 0.25805
Target:  5'- -cGCGCGCGCgAGGAGCGcguGCG-GCa -3'
miRNA:   3'- guCGUGCGCG-UCCUCGCuu-UGCuCGc -5'
24100 5' -56.5 NC_005262.1 + 15729 0.67 0.599355
Target:  5'- gCGGCucguCGCgGCAGGuGCGAccgacgcgcuuGCGGGCGc -3'
miRNA:   3'- -GUCGu---GCG-CGUCCuCGCUu----------UGCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 17245 0.67 0.631837
Target:  5'- -uGgGCGuCGCGGGAGCGGcGGCcGGCGc -3'
miRNA:   3'- guCgUGC-GCGUCCUCGCU-UUGcUCGC- -5'
24100 5' -56.5 NC_005262.1 + 17286 0.73 0.29967
Target:  5'- -uGCGCGgGCAGGGGCGucGCGGuCGg -3'
miRNA:   3'- guCGUGCgCGUCCUCGCuuUGCUcGC- -5'
24100 5' -56.5 NC_005262.1 + 17341 0.7 0.43208
Target:  5'- cCGGCGCggcauucggguccgGCGCGGGcGGCGcgGCGGGCc -3'
miRNA:   3'- -GUCGUG--------------CGCGUCC-UCGCuuUGCUCGc -5'
24100 5' -56.5 NC_005262.1 + 17599 0.73 0.314653
Target:  5'- gCGGCGCaGCGCGcGGAGCuGGAGCGccAGCa -3'
miRNA:   3'- -GUCGUG-CGCGU-CCUCG-CUUUGC--UCGc -5'
24100 5' -56.5 NC_005262.1 + 17798 0.72 0.354556
Target:  5'- -uGCGCGUGCAGGAacGCGAAcACGcGGCu -3'
miRNA:   3'- guCGUGCGCGUCCU--CGCUU-UGC-UCGc -5'
24100 5' -56.5 NC_005262.1 + 17889 0.74 0.270694
Target:  5'- uCGGCGCGCGCAuccggucGGAugccuucugcccGCGGAucACGAGCGu -3'
miRNA:   3'- -GUCGUGCGCGU-------CCU------------CGCUU--UGCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 18139 0.68 0.58104
Target:  5'- aAGCGCuGCGCcucaaccGGGAGCGcGugcccgccugaucgcGCGAGCGc -3'
miRNA:   3'- gUCGUG-CGCG-------UCCUCGCuU---------------UGCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 19301 0.66 0.653508
Target:  5'- gCAGCcgACGUGCuc-GGCGAuGCGAGUGa -3'
miRNA:   3'- -GUCG--UGCGCGuccUCGCUuUGCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 20596 0.67 0.642677
Target:  5'- gCGGCGCGcCGCAGG-GCuGuuGCGuAGCc -3'
miRNA:   3'- -GUCGUGC-GCGUCCuCG-CuuUGC-UCGc -5'
24100 5' -56.5 NC_005262.1 + 20873 0.72 0.345479
Target:  5'- -cGCGCGCGCcGGAcgacgacGCGAcGACGAGCc -3'
miRNA:   3'- guCGUGCGCGuCCU-------CGCU-UUGCUCGc -5'
24100 5' -56.5 NC_005262.1 + 21005 0.66 0.685846
Target:  5'- gGGCgACGCGCcGGAGaCGAuguaGGGCu -3'
miRNA:   3'- gUCG-UGCGCGuCCUC-GCUuug-CUCGc -5'
24100 5' -56.5 NC_005262.1 + 21245 0.7 0.454174
Target:  5'- aCGGCACGa--AGGcGGCGAucCGAGCGg -3'
miRNA:   3'- -GUCGUGCgcgUCC-UCGCUuuGCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 21332 0.66 0.675103
Target:  5'- -cGCACGUcCAGGAgGCGAu-CGAGgCGg -3'
miRNA:   3'- guCGUGCGcGUCCU-CGCUuuGCUC-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.