miRNA display CGI


Results 1 - 20 of 116 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24100 5' -56.5 NC_005262.1 + 212 0.69 0.524874
Target:  5'- gCAGCGCGCGCAcGAGCaugccguACG-GCGu -3'
miRNA:   3'- -GUCGUGCGCGUcCUCGcuu----UGCuCGC- -5'
24100 5' -56.5 NC_005262.1 + 3826 0.69 0.514494
Target:  5'- -uGCAUGCGCgccugaucgAGcGGGCGAAucugcuucGCGAGCGc -3'
miRNA:   3'- guCGUGCGCG---------UC-CUCGCUU--------UGCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 4806 0.66 0.66432
Target:  5'- aAGCGCgacgGCGCGGGAggcGUGAGGCcgccGGCGg -3'
miRNA:   3'- gUCGUG----CGCGUCCU---CGCUUUGc---UCGC- -5'
24100 5' -56.5 NC_005262.1 + 5277 0.68 0.535332
Target:  5'- gCAGCACGgGCAGG-GCGGucGACuGGUu -3'
miRNA:   3'- -GUCGUGCgCGUCCuCGCU--UUGcUCGc -5'
24100 5' -56.5 NC_005262.1 + 5354 0.71 0.406964
Target:  5'- -cGCACGCcuGCcGGGGCGuccuuGACGGGCa -3'
miRNA:   3'- guCGUGCG--CGuCCUCGCu----UUGCUCGc -5'
24100 5' -56.5 NC_005262.1 + 6608 0.8 0.100934
Target:  5'- cCGGguCGaGCGGGAGCGAcACGAGCGg -3'
miRNA:   3'- -GUCguGCgCGUCCUCGCUuUGCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 7268 0.69 0.473874
Target:  5'- aCGGCACaccaGCAGGGGUGucgccgauuCGAGCGg -3'
miRNA:   3'- -GUCGUGcg--CGUCCUCGCuuu------GCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 8051 0.72 0.330196
Target:  5'- gCAGCGCGCGUucugGGuGAGCGugGgGAGCa -3'
miRNA:   3'- -GUCGUGCGCG----UC-CUCGCuuUgCUCGc -5'
24100 5' -56.5 NC_005262.1 + 8208 0.67 0.58857
Target:  5'- gCAGCGaugaucCGCGCGGGccaugagcugucGGCGAAGCucgaagccGAGCGc -3'
miRNA:   3'- -GUCGU------GCGCGUCC------------UCGCUUUG--------CUCGC- -5'
24100 5' -56.5 NC_005262.1 + 8846 0.67 0.599355
Target:  5'- uGGUuuuCGCGCAGGu-UGAAGCGcAGCGa -3'
miRNA:   3'- gUCGu--GCGCGUCCucGCUUUGC-UCGC- -5'
24100 5' -56.5 NC_005262.1 + 9367 0.7 0.41616
Target:  5'- uCGGCGCGCGCGGcGGccuGCGccuccGCGAGCu -3'
miRNA:   3'- -GUCGUGCGCGUC-CU---CGCuu---UGCUCGc -5'
24100 5' -56.5 NC_005262.1 + 10518 0.73 0.307092
Target:  5'- gCAGCA-GCGCGGGGGCGGccgaAACG-GCu -3'
miRNA:   3'- -GUCGUgCGCGUCCUCGCU----UUGCuCGc -5'
24100 5' -56.5 NC_005262.1 + 10559 0.7 0.467918
Target:  5'- cCGGcCGCGCGCAgccgcagcguaccgcGGAgcagcGCGgcGCGAGCGg -3'
miRNA:   3'- -GUC-GUGCGCGU---------------CCU-----CGCuuUGCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 10832 0.72 0.360419
Target:  5'- -cGCAUGCGCguccgccgcgcucaGGGGGCGgcAUGAGUGa -3'
miRNA:   3'- guCGUGCGCG--------------UCCUCGCuuUGCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 10978 0.67 0.631837
Target:  5'- uCGGCGCGC-CGGGAacgccggucGCGcucgcacggcuGACGAGCGa -3'
miRNA:   3'- -GUCGUGCGcGUCCU---------CGCu----------UUGCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 11832 0.72 0.354556
Target:  5'- aCAGUuucgaGCGCAGGcGCGc-GCGAGCGg -3'
miRNA:   3'- -GUCGug---CGCGUCCuCGCuuUGCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 11951 0.69 0.493993
Target:  5'- -cGCACGCGCuGGGGauCGAcGGCGAuGCGu -3'
miRNA:   3'- guCGUGCGCGuCCUC--GCU-UUGCU-CGC- -5'
24100 5' -56.5 NC_005262.1 + 12194 0.69 0.483883
Target:  5'- gAGCAaauCGCGCAGauGGCGA-ACGAGCu -3'
miRNA:   3'- gUCGU---GCGCGUCc-UCGCUuUGCUCGc -5'
24100 5' -56.5 NC_005262.1 + 12488 0.7 0.454174
Target:  5'- gCGGCAUaCGCAGuGAGCGAAACc-GCGc -3'
miRNA:   3'- -GUCGUGcGCGUC-CUCGCUUUGcuCGC- -5'
24100 5' -56.5 NC_005262.1 + 12655 0.67 0.599355
Target:  5'- aAGCGCGCGC-GGcGCGcgGCGAacccuGCGc -3'
miRNA:   3'- gUCGUGCGCGuCCuCGCuuUGCU-----CGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.