miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24100 5' -56.5 NC_005262.1 + 59258 1.07 0.001171
Target:  5'- uCAGCACGCGCAGGAGCGAAACGAGCGc -3'
miRNA:   3'- -GUCGUGCGCGUCCUCGCUUUGCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 6608 0.8 0.100934
Target:  5'- cCGGguCGaGCGGGAGCGAcACGAGCGg -3'
miRNA:   3'- -GUCguGCgCGUCCUCGCUuUGCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 41161 0.8 0.103791
Target:  5'- gCAGCGCGCGCAGGAgggcaccgccGCGAucGCGuGCGc -3'
miRNA:   3'- -GUCGUGCGCGUCCU----------CGCUu-UGCuCGC- -5'
24100 5' -56.5 NC_005262.1 + 59058 0.79 0.12532
Target:  5'- aAGCAgGUGCAGGAGCGcaucaagaagcuGACGGGCGu -3'
miRNA:   3'- gUCGUgCGCGUCCUCGCu-----------UUGCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 44778 0.77 0.16544
Target:  5'- cCAGCGCGCgGCAGGccgAGCucGACGAGCu -3'
miRNA:   3'- -GUCGUGCG-CGUCC---UCGcuUUGCUCGc -5'
24100 5' -56.5 NC_005262.1 + 22494 0.76 0.184112
Target:  5'- aAGCugGCGCGcGAGCGGAucGCGaAGCGg -3'
miRNA:   3'- gUCGugCGCGUcCUCGCUU--UGC-UCGC- -5'
24100 5' -56.5 NC_005262.1 + 24770 0.75 0.210048
Target:  5'- uCAGCAC-CGCGGcGAGCcGGGCGAGCa -3'
miRNA:   3'- -GUCGUGcGCGUC-CUCGcUUUGCUCGc -5'
24100 5' -56.5 NC_005262.1 + 13012 0.75 0.215599
Target:  5'- -uGUACGCGCAGGAGCGcgccaaGGGCu -3'
miRNA:   3'- guCGUGCGCGUCCUCGCuuug--CUCGc -5'
24100 5' -56.5 NC_005262.1 + 44155 0.75 0.215599
Target:  5'- -cGCGCGCGCgaucgggcAGGAGCGcggcGGCGAGCu -3'
miRNA:   3'- guCGUGCGCG--------UCCUCGCu---UUGCUCGc -5'
24100 5' -56.5 NC_005262.1 + 15594 0.74 0.25805
Target:  5'- -cGCGCGCGCgAGGAGCGcguGCG-GCa -3'
miRNA:   3'- guCGUGCGCG-UCCUCGCuu-UGCuCGc -5'
24100 5' -56.5 NC_005262.1 + 50328 0.74 0.260671
Target:  5'- gCAGCGCccgccGCGCAGGA-CGAAgcgcccgcgacgaccGCGAGCGg -3'
miRNA:   3'- -GUCGUG-----CGCGUCCUcGCUU---------------UGCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 47260 0.74 0.264644
Target:  5'- cCAGCAgGCGCAGGAcaagGCGAaaacgGACGccgcGGCGa -3'
miRNA:   3'- -GUCGUgCGCGUCCU----CGCU-----UUGC----UCGC- -5'
24100 5' -56.5 NC_005262.1 + 17889 0.74 0.270694
Target:  5'- uCGGCGCGCGCAuccggucGGAugccuucugcccGCGGAucACGAGCGu -3'
miRNA:   3'- -GUCGUGCGCGU-------CCU------------CGCUU--UGCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 61152 0.73 0.278241
Target:  5'- gCAGCAgauCGCgGCGGcGGGCGAgcuGACGGGCGc -3'
miRNA:   3'- -GUCGU---GCG-CGUC-CUCGCU---UUGCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 17286 0.73 0.29967
Target:  5'- -uGCGCGgGCAGGGGCGucGCGGuCGg -3'
miRNA:   3'- guCGUGCgCGUCCUCGCuuUGCUcGC- -5'
24100 5' -56.5 NC_005262.1 + 10518 0.73 0.307092
Target:  5'- gCAGCA-GCGCGGGGGCGGccgaAACG-GCu -3'
miRNA:   3'- -GUCGUgCGCGUCCUCGCU----UUGCuCGc -5'
24100 5' -56.5 NC_005262.1 + 17599 0.73 0.314653
Target:  5'- gCGGCGCaGCGCGcGGAGCuGGAGCGccAGCa -3'
miRNA:   3'- -GUCGUG-CGCGU-CCUCG-CUUUGC--UCGc -5'
24100 5' -56.5 NC_005262.1 + 36751 0.73 0.314653
Target:  5'- gUAGCGCGUG-AGGucgauGGCGggGCGGGCu -3'
miRNA:   3'- -GUCGUGCGCgUCC-----UCGCuuUGCUCGc -5'
24100 5' -56.5 NC_005262.1 + 40292 0.73 0.314653
Target:  5'- -uGCugGCGCAGcuccucGGGCGucAGCGGGCGa -3'
miRNA:   3'- guCGugCGCGUC------CUCGCu-UUGCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 48780 0.72 0.330196
Target:  5'- uGGCA-GCGCAGGAcgugcGCGAGcucACGAGCc -3'
miRNA:   3'- gUCGUgCGCGUCCU-----CGCUU---UGCUCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.