miRNA display CGI


Results 21 - 40 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24101 3' -51.8 NC_005262.1 + 10208 0.7 0.709552
Target:  5'- cUCGUUuGCGcGGUACaugcuGCCGGuCAGCGCg -3'
miRNA:   3'- uAGUAG-CGUuUCAUG-----CGGCC-GUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 10341 0.67 0.841142
Target:  5'- -cCGUUGUccucgACGCCGGCGccGCGCu -3'
miRNA:   3'- uaGUAGCGuuucaUGCGGCCGU--UGCG- -5'
24101 3' -51.8 NC_005262.1 + 10734 0.74 0.478243
Target:  5'- ---uUCGCGAuc-GCGCCGGuCAGCGCg -3'
miRNA:   3'- uaguAGCGUUucaUGCGGCC-GUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 10976 0.73 0.520584
Target:  5'- uGUCGgcgCGCcGGGaACGCCGGUcGCGCu -3'
miRNA:   3'- -UAGUa--GCGuUUCaUGCGGCCGuUGCG- -5'
24101 3' -51.8 NC_005262.1 + 11556 0.67 0.841142
Target:  5'- -gCAUUGUAGAcgAUGCCGauuGCGACGCa -3'
miRNA:   3'- uaGUAGCGUUUcaUGCGGC---CGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 11564 0.72 0.586551
Target:  5'- cAUCAcgCGCGcuGcUAUGCCGGCGGCGg -3'
miRNA:   3'- -UAGUa-GCGUuuC-AUGCGGCCGUUGCg -5'
24101 3' -51.8 NC_005262.1 + 11638 0.72 0.575407
Target:  5'- -cCAUCgGCucGGcgGCGCCGGCGucGCGCu -3'
miRNA:   3'- uaGUAG-CGuuUCa-UGCGGCCGU--UGCG- -5'
24101 3' -51.8 NC_005262.1 + 12413 0.72 0.553275
Target:  5'- gGUCAggCGCGGccUugGCCGGCGuCGCg -3'
miRNA:   3'- -UAGUa-GCGUUucAugCGGCCGUuGCG- -5'
24101 3' -51.8 NC_005262.1 + 12467 0.68 0.813347
Target:  5'- -aCGUCGCucacGGgGCGCCGcGCGgcauACGCa -3'
miRNA:   3'- uaGUAGCGuu--UCaUGCGGC-CGU----UGCG- -5'
24101 3' -51.8 NC_005262.1 + 12509 0.66 0.874955
Target:  5'- -aCcgCGCuucagAUGCCGcGCGACGCg -3'
miRNA:   3'- uaGuaGCGuuucaUGCGGC-CGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 14439 0.66 0.89032
Target:  5'- -gCGUCGCcGAGU-CGUCaGCgAGCGCg -3'
miRNA:   3'- uaGUAGCGuUUCAuGCGGcCG-UUGCG- -5'
24101 3' -51.8 NC_005262.1 + 14617 0.69 0.772531
Target:  5'- gAUCAUCGCc--GUGCGCgccgcugCGGcCGAUGCg -3'
miRNA:   3'- -UAGUAGCGuuuCAUGCG-------GCC-GUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 15158 0.68 0.822825
Target:  5'- aGUCggCGCGGAuGUugGaCGGCAcgcaGCGCu -3'
miRNA:   3'- -UAGuaGCGUUU-CAugCgGCCGU----UGCG- -5'
24101 3' -51.8 NC_005262.1 + 15597 0.66 0.882772
Target:  5'- -gCG-CGCGAGGaGCGCgugCGGCAggaGCGCa -3'
miRNA:   3'- uaGUaGCGUUUCaUGCG---GCCGU---UGCG- -5'
24101 3' -51.8 NC_005262.1 + 15690 0.7 0.709552
Target:  5'- uUCGUCGCcGAG-ACGgaCGaGCAGCGCu -3'
miRNA:   3'- uAGUAGCGuUUCaUGCg-GC-CGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 15707 0.7 0.709552
Target:  5'- cAUCAUCGCGcgucgGCGCCgGGCGGCu- -3'
miRNA:   3'- -UAGUAGCGUuuca-UGCGG-CCGUUGcg -5'
24101 3' -51.8 NC_005262.1 + 15733 0.69 0.730256
Target:  5'- cUCGUCGCGgcAGGUGCGaCCGacGCGcuugcggGCGCg -3'
miRNA:   3'- uAGUAGCGU--UUCAUGC-GGC--CGU-------UGCG- -5'
24101 3' -51.8 NC_005262.1 + 16038 0.7 0.698536
Target:  5'- -cCcgCGCGAugccgGGUucgccGCgGCCGGCGGCGCa -3'
miRNA:   3'- uaGuaGCGUU-----UCA-----UG-CGGCCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 16304 0.7 0.675195
Target:  5'- aGUCGUCG--GAGUA-GCCGGCGuucuucaGCGCg -3'
miRNA:   3'- -UAGUAGCguUUCAUgCGGCCGU-------UGCG- -5'
24101 3' -51.8 NC_005262.1 + 16898 0.68 0.813347
Target:  5'- gAUCGcccugCGCGAGGUACGUuucagcgaucuuCGGCA-CGCc -3'
miRNA:   3'- -UAGUa----GCGUUUCAUGCG------------GCCGUuGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.