miRNA display CGI


Results 1 - 20 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24101 3' -51.8 NC_005262.1 + 76 0.66 0.874955
Target:  5'- ---cUCGCGAAGaa-GUCGGCcGCGCc -3'
miRNA:   3'- uaguAGCGUUUCaugCGGCCGuUGCG- -5'
24101 3' -51.8 NC_005262.1 + 125 0.71 0.665128
Target:  5'- cGUCGUCGCc--GU-CGCCGGCAAUuccaGCc -3'
miRNA:   3'- -UAGUAGCGuuuCAuGCGGCCGUUG----CG- -5'
24101 3' -51.8 NC_005262.1 + 1687 0.75 0.418134
Target:  5'- uUCAUcCGCGAcgcGGUugccGCGgCGGCGACGCa -3'
miRNA:   3'- uAGUA-GCGUU---UCA----UGCgGCCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 1989 0.69 0.730256
Target:  5'- cUCGagCGCGAGGcaUGCGCCGcGCAggcgaaaACGCg -3'
miRNA:   3'- uAGUa-GCGUUUC--AUGCGGC-CGU-------UGCG- -5'
24101 3' -51.8 NC_005262.1 + 2084 0.66 0.911301
Target:  5'- -----aGCAGAGcGCGCCGaGCGaacccgGCGCg -3'
miRNA:   3'- uaguagCGUUUCaUGCGGC-CGU------UGCG- -5'
24101 3' -51.8 NC_005262.1 + 3720 0.66 0.89032
Target:  5'- cGUCAgCGCGuc--GCGCgCGGCGuuGCGCa -3'
miRNA:   3'- -UAGUaGCGUuucaUGCG-GCCGU--UGCG- -5'
24101 3' -51.8 NC_005262.1 + 4077 0.67 0.841142
Target:  5'- -aCGUUGUAcaccuUGCCGGCGACGUa -3'
miRNA:   3'- uaGUAGCGUuucauGCGGCCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 4641 0.72 0.575407
Target:  5'- uUCuUCGCGuccuccaUGCGCgCGGCGACGCg -3'
miRNA:   3'- uAGuAGCGUuuc----AUGCG-GCCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 4809 0.66 0.89032
Target:  5'- -gCcgCGUAGcgcuGGUuuCGCCGGCGcgACGCa -3'
miRNA:   3'- uaGuaGCGUU----UCAu-GCGGCCGU--UGCG- -5'
24101 3' -51.8 NC_005262.1 + 4930 0.74 0.457715
Target:  5'- -aCG-CGCGGAGcUGCGCCGGCGugACGUc -3'
miRNA:   3'- uaGUaGCGUUUC-AUGCGGCCGU--UGCG- -5'
24101 3' -51.8 NC_005262.1 + 5010 0.68 0.783765
Target:  5'- cGUCGUCGaccca-GCGCCGG-AACGCg -3'
miRNA:   3'- -UAGUAGCguuucaUGCGGCCgUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 5183 0.66 0.874955
Target:  5'- -gCGUCGCGG---GCGCgGGCGcggccgGCGCg -3'
miRNA:   3'- uaGUAGCGUUucaUGCGgCCGU------UGCG- -5'
24101 3' -51.8 NC_005262.1 + 5582 0.69 0.763202
Target:  5'- uUCGUgGUAcGGgcgGCGCCgcucuccgcaGGCGACGCg -3'
miRNA:   3'- uAGUAgCGUuUCa--UGCGG----------CCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 5977 0.67 0.849962
Target:  5'- aAUgAUCGUgc-GUA-GCCGGCAAUGCc -3'
miRNA:   3'- -UAgUAGCGuuuCAUgCGGCCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 6439 0.67 0.847341
Target:  5'- cGUCcuUCGUguAGUucggcuccggcgagACGCCGGCAucgACGCg -3'
miRNA:   3'- -UAGu-AGCGuuUCA--------------UGCGGCCGU---UGCG- -5'
24101 3' -51.8 NC_005262.1 + 7974 0.68 0.790811
Target:  5'- ---uUCGCGAAgcgcucacgaccucGUAgcCGCCGGCGGCGUu -3'
miRNA:   3'- uaguAGCGUUU--------------CAU--GCGGCCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 8761 0.66 0.889578
Target:  5'- gAUCAUCGUGAAcGUcuugcccGCGCCGaccGCGuGCGCg -3'
miRNA:   3'- -UAGUAGCGUUU-CA-------UGCGGC---CGU-UGCG- -5'
24101 3' -51.8 NC_005262.1 + 8847 0.67 0.855994
Target:  5'- gGUUuUCGCGcAGGUugaagcgcagcgacACGcCCGGCAGCGUc -3'
miRNA:   3'- -UAGuAGCGU-UUCA--------------UGC-GGCCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 8935 0.69 0.752704
Target:  5'- cUCGUUGUAGuAGUugacgaGCCGGuCGGCGCg -3'
miRNA:   3'- uAGUAGCGUU-UCAug----CGGCC-GUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 9752 0.66 0.910643
Target:  5'- cGUCGUCGCcc-GUGCGCUcgauggugcuguaGGCGA-GCa -3'
miRNA:   3'- -UAGUAGCGuuuCAUGCGG-------------CCGUUgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.