miRNA display CGI


Results 1 - 20 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24101 3' -51.8 NC_005262.1 + 59351 1.1 0.002271
Target:  5'- gAUCAUCGCAAAGUACGCCGGCAACGCc -3'
miRNA:   3'- -UAGUAGCGUUUCAUGCGGCCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 30815 0.84 0.117332
Target:  5'- -aCAUCGCAAacccGGUGCGCgucuCGGCGACGCg -3'
miRNA:   3'- uaGUAGCGUU----UCAUGCG----GCCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 63069 0.81 0.194584
Target:  5'- cGUCAUCGCGggcGAGUAUG-CGGCGGCGUg -3'
miRNA:   3'- -UAGUAGCGU---UUCAUGCgGCCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 60668 0.8 0.228925
Target:  5'- cUCAUCGCGcucGGcAUGCUGGCGACGCu -3'
miRNA:   3'- uAGUAGCGUu--UCaUGCGGCCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 27860 0.79 0.254567
Target:  5'- -gCGUCGCAAGG-ACGgCGGCAAgGCg -3'
miRNA:   3'- uaGUAGCGUUUCaUGCgGCCGUUgCG- -5'
24101 3' -51.8 NC_005262.1 + 17035 0.77 0.320809
Target:  5'- -gCGUCGCcgccuGUACGaCCGGCGugGCg -3'
miRNA:   3'- uaGUAGCGuuu--CAUGC-GGCCGUugCG- -5'
24101 3' -51.8 NC_005262.1 + 60819 0.77 0.328918
Target:  5'- --uGUCGCAgGAGUuuGCGCCGGCcuACGCg -3'
miRNA:   3'- uagUAGCGU-UUCA--UGCGGCCGu-UGCG- -5'
24101 3' -51.8 NC_005262.1 + 42919 0.77 0.337177
Target:  5'- cGUCGUCGCGucGU-CGuCCGGCGcGCGCg -3'
miRNA:   3'- -UAGUAGCGUuuCAuGC-GGCCGU-UGCG- -5'
24101 3' -51.8 NC_005262.1 + 43608 0.75 0.39914
Target:  5'- -aUAUCGCGcAGGUGacgcuCGCCGGCAccgGCGCa -3'
miRNA:   3'- uaGUAGCGU-UUCAU-----GCGGCCGU---UGCG- -5'
24101 3' -51.8 NC_005262.1 + 43844 0.75 0.39914
Target:  5'- -gCcgCGCGcggcGGUGCGCCGGCAggaccucgGCGCg -3'
miRNA:   3'- uaGuaGCGUu---UCAUGCGGCCGU--------UGCG- -5'
24101 3' -51.8 NC_005262.1 + 23827 0.75 0.408568
Target:  5'- gGUCAUCuCAuGG-GCGCCGGCgAGCGCa -3'
miRNA:   3'- -UAGUAGcGUuUCaUGCGGCCG-UUGCG- -5'
24101 3' -51.8 NC_005262.1 + 1687 0.75 0.418134
Target:  5'- uUCAUcCGCGAcgcGGUugccGCGgCGGCGACGCa -3'
miRNA:   3'- uAGUA-GCGUU---UCA----UGCgGCCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 40865 0.75 0.437668
Target:  5'- cUCG-CGCGGAGcaugGCGUCGGCgAGCGCg -3'
miRNA:   3'- uAGUaGCGUUUCa---UGCGGCCG-UUGCG- -5'
24101 3' -51.8 NC_005262.1 + 27555 0.74 0.447629
Target:  5'- cUCAgccccgGCGAGG-ACGCCGcGCAGCGCg -3'
miRNA:   3'- uAGUag----CGUUUCaUGCGGC-CGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 4930 0.74 0.457715
Target:  5'- -aCG-CGCGGAGcUGCGCCGGCGugACGUc -3'
miRNA:   3'- uaGUaGCGUUUC-AUGCGGCCGU--UGCG- -5'
24101 3' -51.8 NC_005262.1 + 49745 0.74 0.457715
Target:  5'- ----cCGCAccG-ACGCCGGCGGCGCc -3'
miRNA:   3'- uaguaGCGUuuCaUGCGGCCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 19294 0.74 0.457715
Target:  5'- uAUCGUCGCAGccgacGUGC-UCGGCGAUGCg -3'
miRNA:   3'- -UAGUAGCGUUu----CAUGcGGCCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 40863 0.74 0.467921
Target:  5'- cAUCAgcaCGCAAA--AUGCCGGCAGCGg -3'
miRNA:   3'- -UAGUa--GCGUUUcaUGCGGCCGUUGCg -5'
24101 3' -51.8 NC_005262.1 + 17150 0.74 0.478243
Target:  5'- -gCGUCGCAaucGAGaAgGCCGGCAAgGCc -3'
miRNA:   3'- uaGUAGCGU---UUCaUgCGGCCGUUgCG- -5'
24101 3' -51.8 NC_005262.1 + 10734 0.74 0.478243
Target:  5'- ---uUCGCGAuc-GCGCCGGuCAGCGCg -3'
miRNA:   3'- uaguAGCGUUucaUGCGGCC-GUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.