miRNA display CGI


Results 1 - 20 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24101 3' -51.8 NC_005262.1 + 11638 0.72 0.575407
Target:  5'- -cCAUCgGCucGGcgGCGCCGGCGucGCGCu -3'
miRNA:   3'- uaGUAG-CGuuUCa-UGCGGCCGU--UGCG- -5'
24101 3' -51.8 NC_005262.1 + 40863 0.74 0.467921
Target:  5'- cAUCAgcaCGCAAA--AUGCCGGCAGCGg -3'
miRNA:   3'- -UAGUa--GCGUUUcaUGCGGCCGUUGCg -5'
24101 3' -51.8 NC_005262.1 + 17150 0.74 0.478243
Target:  5'- -gCGUCGCAaucGAGaAgGCCGGCAAgGCc -3'
miRNA:   3'- uaGUAGCGU---UUCaUgCGGCCGUUgCG- -5'
24101 3' -51.8 NC_005262.1 + 60545 0.74 0.488676
Target:  5'- uUCGacCGCAAGGgcacgcugACGCCGGCGcucgGCGCg -3'
miRNA:   3'- uAGUa-GCGUUUCa-------UGCGGCCGU----UGCG- -5'
24101 3' -51.8 NC_005262.1 + 39131 0.73 0.499214
Target:  5'- uUUGUCGCucaacgACGCUGGCGACGUa -3'
miRNA:   3'- uAGUAGCGuuuca-UGCGGCCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 33794 0.73 0.499214
Target:  5'- cUCAUCGCuc---GCGCgGGCAACGUc -3'
miRNA:   3'- uAGUAGCGuuucaUGCGgCCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 10976 0.73 0.520584
Target:  5'- uGUCGgcgCGCcGGGaACGCCGGUcGCGCu -3'
miRNA:   3'- -UAGUa--GCGuUUCaUGCGGCCGuUGCG- -5'
24101 3' -51.8 NC_005262.1 + 17604 0.73 0.542302
Target:  5'- -gCAgcgCGCGGAGcuggaGCGCCaGCAGCGCg -3'
miRNA:   3'- uaGUa--GCGUUUCa----UGCGGcCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 35213 0.72 0.553275
Target:  5'- -aCGUcCGCAAGGaUGCggagGUCGGCGGCGCg -3'
miRNA:   3'- uaGUA-GCGUUUC-AUG----CGGCCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 49745 0.74 0.457715
Target:  5'- ----cCGCAccG-ACGCCGGCGGCGCc -3'
miRNA:   3'- uaguaGCGUuuCaUGCGGCCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 19294 0.74 0.457715
Target:  5'- uAUCGUCGCAGccgacGUGC-UCGGCGAUGCg -3'
miRNA:   3'- -UAGUAGCGUUu----CAUGcGGCCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 27555 0.74 0.447629
Target:  5'- cUCAgccccgGCGAGG-ACGCCGcGCAGCGCg -3'
miRNA:   3'- uAGUag----CGUUUCaUGCGGC-CGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 30815 0.84 0.117332
Target:  5'- -aCAUCGCAAacccGGUGCGCgucuCGGCGACGCg -3'
miRNA:   3'- uaGUAGCGUU----UCAUGCG----GCCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 63069 0.81 0.194584
Target:  5'- cGUCAUCGCGggcGAGUAUG-CGGCGGCGUg -3'
miRNA:   3'- -UAGUAGCGU---UUCAUGCgGCCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 60668 0.8 0.228925
Target:  5'- cUCAUCGCGcucGGcAUGCUGGCGACGCu -3'
miRNA:   3'- uAGUAGCGUu--UCaUGCGGCCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 27860 0.79 0.254567
Target:  5'- -gCGUCGCAAGG-ACGgCGGCAAgGCg -3'
miRNA:   3'- uaGUAGCGUUUCaUGCgGCCGUUgCG- -5'
24101 3' -51.8 NC_005262.1 + 60819 0.77 0.328918
Target:  5'- --uGUCGCAgGAGUuuGCGCCGGCcuACGCg -3'
miRNA:   3'- uagUAGCGU-UUCA--UGCGGCCGu-UGCG- -5'
24101 3' -51.8 NC_005262.1 + 42919 0.77 0.337177
Target:  5'- cGUCGUCGCGucGU-CGuCCGGCGcGCGCg -3'
miRNA:   3'- -UAGUAGCGUuuCAuGC-GGCCGU-UGCG- -5'
24101 3' -51.8 NC_005262.1 + 43844 0.75 0.39914
Target:  5'- -gCcgCGCGcggcGGUGCGCCGGCAggaccucgGCGCg -3'
miRNA:   3'- uaGuaGCGUu---UCAUGCGGCCGU--------UGCG- -5'
24101 3' -51.8 NC_005262.1 + 43608 0.75 0.39914
Target:  5'- -aUAUCGCGcAGGUGacgcuCGCCGGCAccgGCGCa -3'
miRNA:   3'- uaGUAGCGU-UUCAU-----GCGGCCGU---UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.