Results 1 - 20 of 174 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24101 | 3' | -51.8 | NC_005262.1 | + | 23311 | 0.66 | 0.882772 |
Target: 5'- cAUCAagCGCAucAAG-GCGCCGcGCAcgagcACGCg -3' miRNA: 3'- -UAGUa-GCGU--UUCaUGCGGC-CGU-----UGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 33619 | 0.66 | 0.897594 |
Target: 5'- -aCGUCGCAGGaaaaGCCGcCGGCGCa -3' miRNA: 3'- uaGUAGCGUUUcaugCGGCcGUUGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 47916 | 0.66 | 0.911301 |
Target: 5'- uGUUuUUGCAGAcgccGaGCGCCGGCGACa- -3' miRNA: 3'- -UAGuAGCGUUU----CaUGCGGCCGUUGcg -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 35618 | 0.66 | 0.897594 |
Target: 5'- -gCGUUGCAGu---CGuCCGGCAACGg -3' miRNA: 3'- uaGUAGCGUUucauGC-GGCCGUUGCg -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 25536 | 0.66 | 0.904589 |
Target: 5'- -gCGUCGCGAcguccGUGCGC-GGCGGCa- -3' miRNA: 3'- uaGUAGCGUUu----CAUGCGgCCGUUGcg -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 52690 | 0.66 | 0.904589 |
Target: 5'- cUCga-GCAggAAGgcCGCCGGcCGACGCc -3' miRNA: 3'- uAGuagCGU--UUCauGCGGCC-GUUGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 26576 | 0.66 | 0.897594 |
Target: 5'- aGUUcgCGCAGGcaUACGCUGGCGGCc- -3' miRNA: 3'- -UAGuaGCGUUUc-AUGCGGCCGUUGcg -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 45780 | 0.66 | 0.904589 |
Target: 5'- -gCAUCGCGgcGaAgGgCGGCGGCGUg -3' miRNA: 3'- uaGUAGCGUuuCaUgCgGCCGUUGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 23820 | 0.66 | 0.874955 |
Target: 5'- -aCGaCGCGcAGGUAC-UCGGCAACGUa -3' miRNA: 3'- uaGUaGCGU-UUCAUGcGGCCGUUGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 32425 | 0.66 | 0.904589 |
Target: 5'- -cCAUCGCugccGGUuucauCGCCGGCAugaagaaggcuCGCu -3' miRNA: 3'- uaGUAGCGuu--UCAu----GCGGCCGUu----------GCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 4809 | 0.66 | 0.89032 |
Target: 5'- -gCcgCGUAGcgcuGGUuuCGCCGGCGcgACGCa -3' miRNA: 3'- uaGuaGCGUU----UCAu-GCGGCCGU--UGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 44241 | 0.66 | 0.89032 |
Target: 5'- -aCAUCGCGAgcgauGGcucGCGCCacuGGCuGACGCg -3' miRNA: 3'- uaGUAGCGUU-----UCa--UGCGG---CCG-UUGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 46747 | 0.66 | 0.904589 |
Target: 5'- gAUCgAUCGCcgccacgccgGucGUACaGgCGGCGACGCg -3' miRNA: 3'- -UAG-UAGCG----------UuuCAUG-CgGCCGUUGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 12509 | 0.66 | 0.874955 |
Target: 5'- -aCcgCGCuucagAUGCCGcGCGACGCg -3' miRNA: 3'- uaGuaGCGuuucaUGCGGC-CGUUGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 5183 | 0.66 | 0.874955 |
Target: 5'- -gCGUCGCGG---GCGCgGGCGcggccgGCGCg -3' miRNA: 3'- uaGUAGCGUUucaUGCGgCCGU------UGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 41674 | 0.66 | 0.911301 |
Target: 5'- cGUCAUCGC------CGCCGGCAcCGg -3' miRNA: 3'- -UAGUAGCGuuucauGCGGCCGUuGCg -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 15597 | 0.66 | 0.882772 |
Target: 5'- -gCG-CGCGAGGaGCGCgugCGGCAggaGCGCa -3' miRNA: 3'- uaGUaGCGUUUCaUGCG---GCCGU---UGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 54172 | 0.66 | 0.911301 |
Target: 5'- --gAUCGUcAAG-GCGCCGGUccuguccgAGCGCg -3' miRNA: 3'- uagUAGCGuUUCaUGCGGCCG--------UUGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 76 | 0.66 | 0.874955 |
Target: 5'- ---cUCGCGAAGaa-GUCGGCcGCGCc -3' miRNA: 3'- uaguAGCGUUUCaugCGGCCGuUGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 40536 | 0.66 | 0.896162 |
Target: 5'- cAUCGUCGCGgcGggcggcucuuacGCGCCGgGCAACa- -3' miRNA: 3'- -UAGUAGCGUuuCa-----------UGCGGC-CGUUGcg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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