miRNA display CGI


Results 21 - 40 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24101 5' -63.9 NC_005262.1 + 34993 0.66 0.317831
Target:  5'- cAGGCaGC-CGgGCAGCAG-CGCG-GGCc -3'
miRNA:   3'- -UCCG-CGaGCgCGUCGUCcGCGCgCUG- -5'
24101 5' -63.9 NC_005262.1 + 21690 0.66 0.289299
Target:  5'- cGGCGC-CGCGCugcuguacGCGGGCaCGCaGAUc -3'
miRNA:   3'- uCCGCGaGCGCGu-------CGUCCGcGCG-CUG- -5'
24101 5' -63.9 NC_005262.1 + 33280 0.66 0.289299
Target:  5'- gAGGCGUaccgcaUCGCGCGcacGcCGGGCGC-CGAa -3'
miRNA:   3'- -UCCGCG------AGCGCGU---C-GUCCGCGcGCUg -5'
24101 5' -63.9 NC_005262.1 + 3163 0.66 0.332871
Target:  5'- cGGUGCUCGcCGCucgcCAGcGUGCGCauGGCg -3'
miRNA:   3'- uCCGCGAGC-GCGuc--GUC-CGCGCG--CUG- -5'
24101 5' -63.9 NC_005262.1 + 40493 0.66 0.296239
Target:  5'- uGGCGgaCGgGCAGaacGGCaccaucgaccuGCGCGACa -3'
miRNA:   3'- uCCGCgaGCgCGUCgu-CCG-----------CGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 37909 0.66 0.296239
Target:  5'- uGGCGCgggcuauaUCGCGUGGacgauuGGCGCGCaugGACc -3'
miRNA:   3'- uCCGCG--------AGCGCGUCgu----CCGCGCG---CUG- -5'
24101 5' -63.9 NC_005262.1 + 63699 0.66 0.332871
Target:  5'- cGGUGaCaUGCGCAGaa-GCGUGCGGCg -3'
miRNA:   3'- uCCGC-GaGCGCGUCgucCGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 27513 0.66 0.317831
Target:  5'- gAGGUGUUCGCGUcGCc-GCGCGCc-- -3'
miRNA:   3'- -UCCGCGAGCGCGuCGucCGCGCGcug -5'
24101 5' -63.9 NC_005262.1 + 56737 0.66 0.332871
Target:  5'- cGGCGUUCGacauggccgcCGC-GCuGGCGUcggGCGACg -3'
miRNA:   3'- uCCGCGAGC----------GCGuCGuCCGCG---CGCUG- -5'
24101 5' -63.9 NC_005262.1 + 23386 0.66 0.325286
Target:  5'- cAGGuCGCcgaCGCGCGGCuGaaucCGCGCGAa -3'
miRNA:   3'- -UCC-GCGa--GCGCGUCGuCc---GCGCGCUg -5'
24101 5' -63.9 NC_005262.1 + 59711 0.66 0.29206
Target:  5'- cGGGCGCUaCGuCGcCGGCaAGGUGUacaacgugguggaugGCGGCg -3'
miRNA:   3'- -UCCGCGA-GC-GC-GUCG-UCCGCG---------------CGCUG- -5'
24101 5' -63.9 NC_005262.1 + 21343 0.66 0.317831
Target:  5'- gAGGCGaUCGagGCGGCcaAGGCcGCGCGcaGCg -3'
miRNA:   3'- -UCCGCgAGCg-CGUCG--UCCG-CGCGC--UG- -5'
24101 5' -63.9 NC_005262.1 + 47337 0.66 0.288613
Target:  5'- cGGCGCUCGagaCGCAGCgccagaaAGGC-CGCaugGACc -3'
miRNA:   3'- uCCGCGAGC---GCGUCG-------UCCGcGCG---CUG- -5'
24101 5' -63.9 NC_005262.1 + 30501 0.66 0.332871
Target:  5'- cGGC-UUCgGCGCccGGCGuGCGCGCGAUg -3'
miRNA:   3'- uCCGcGAG-CGCG--UCGUcCGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 39616 0.66 0.317831
Target:  5'- cGGGCGUgaacUCGC-CGgggaacguGCAGGCGUGCGcCu -3'
miRNA:   3'- -UCCGCG----AGCGcGU--------CGUCCGCGCGCuG- -5'
24101 5' -63.9 NC_005262.1 + 9935 0.66 0.310504
Target:  5'- cGGCGCaaaGCGCAGC--GCGCuGaCGGCg -3'
miRNA:   3'- uCCGCGag-CGCGUCGucCGCG-C-GCUG- -5'
24101 5' -63.9 NC_005262.1 + 36718 0.66 0.317831
Target:  5'- gAGGCggaugucgccgaGCUCGCGCAcgaacGCGuaGCGCGUGAg -3'
miRNA:   3'- -UCCG------------CGAGCGCGU-----CGUc-CGCGCGCUg -5'
24101 5' -63.9 NC_005262.1 + 58934 0.66 0.296239
Target:  5'- uGGCGCgCGCuucuCGGUcGGCGCGCaGCa -3'
miRNA:   3'- uCCGCGaGCGc---GUCGuCCGCGCGcUG- -5'
24101 5' -63.9 NC_005262.1 + 26046 0.66 0.303307
Target:  5'- cGcCGCggCGCGCaAGCAGGgGCGCa-- -3'
miRNA:   3'- uCcGCGa-GCGCG-UCGUCCgCGCGcug -5'
24101 5' -63.9 NC_005262.1 + 47309 0.66 0.332871
Target:  5'- -aGCGcCUCGCccagcucguccgGCAGCGGGauaCGUGCGAUu -3'
miRNA:   3'- ucCGC-GAGCG------------CGUCGUCC---GCGCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.