miRNA display CGI


Results 1 - 20 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24101 5' -63.9 NC_005262.1 + 21690 0.66 0.289299
Target:  5'- cGGCGC-CGCGCugcuguacGCGGGCaCGCaGAUc -3'
miRNA:   3'- uCCGCGaGCGCGu-------CGUCCGcGCG-CUG- -5'
24101 5' -63.9 NC_005262.1 + 26046 0.66 0.303307
Target:  5'- cGcCGCggCGCGCaAGCAGGgGCGCa-- -3'
miRNA:   3'- uCcGCGa-GCGCG-UCGUCCgCGCGcug -5'
24101 5' -63.9 NC_005262.1 + 9935 0.66 0.310504
Target:  5'- cGGCGCaaaGCGCAGC--GCGCuGaCGGCg -3'
miRNA:   3'- uCCGCGag-CGCGUCGucCGCG-C-GCUG- -5'
24101 5' -63.9 NC_005262.1 + 33280 0.66 0.289299
Target:  5'- gAGGCGUaccgcaUCGCGCGcacGcCGGGCGC-CGAa -3'
miRNA:   3'- -UCCGCG------AGCGCGU---C-GUCCGCGcGCUg -5'
24101 5' -63.9 NC_005262.1 + 40139 0.66 0.310504
Target:  5'- cGaCGCUCGCGCugcaacccGGaCAGG-GUGCGGCg -3'
miRNA:   3'- uCcGCGAGCGCG--------UC-GUCCgCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 40493 0.66 0.296239
Target:  5'- uGGCGgaCGgGCAGaacGGCaccaucgaccuGCGCGACa -3'
miRNA:   3'- uCCGCgaGCgCGUCgu-CCG-----------CGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 40724 0.66 0.332871
Target:  5'- cGGCGCUgaCGCccucgaGCA-CGGGCG-GCGGCg -3'
miRNA:   3'- uCCGCGA--GCG------CGUcGUCCGCgCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 47337 0.66 0.288613
Target:  5'- cGGCGCUCGagaCGCAGCgccagaaAGGC-CGCaugGACc -3'
miRNA:   3'- uCCGCGAGC---GCGUCG-------UCCGcGCG---CUG- -5'
24101 5' -63.9 NC_005262.1 + 21343 0.66 0.317831
Target:  5'- gAGGCGaUCGagGCGGCcaAGGCcGCGCGcaGCg -3'
miRNA:   3'- -UCCGCgAGCg-CGUCG--UCCG-CGCGC--UG- -5'
24101 5' -63.9 NC_005262.1 + 13008 0.66 0.303307
Target:  5'- uGGGUGUaCGCGCAGgA-GCGCGCcaagGGCu -3'
miRNA:   3'- -UCCGCGaGCGCGUCgUcCGCGCG----CUG- -5'
24101 5' -63.9 NC_005262.1 + 12639 0.66 0.325286
Target:  5'- cGGCaccGUgaagaagaagCGCGC-GC-GGCGCGCGGCg -3'
miRNA:   3'- uCCG---CGa---------GCGCGuCGuCCGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 49373 0.66 0.303307
Target:  5'- cGGCGacgCGCGCGuucaucaccGCGGGCGuCGCaACu -3'
miRNA:   3'- uCCGCga-GCGCGU---------CGUCCGC-GCGcUG- -5'
24101 5' -63.9 NC_005262.1 + 58934 0.66 0.296239
Target:  5'- uGGCGCgCGCuucuCGGUcGGCGCGCaGCa -3'
miRNA:   3'- uCCGCGaGCGc---GUCGuCCGCGCGcUG- -5'
24101 5' -63.9 NC_005262.1 + 28285 0.66 0.317831
Target:  5'- cGGCGCUgucgccuaUGCGC-GCAaGCGCGUGcGCa -3'
miRNA:   3'- uCCGCGA--------GCGCGuCGUcCGCGCGC-UG- -5'
24101 5' -63.9 NC_005262.1 + 37909 0.66 0.296239
Target:  5'- uGGCGCgggcuauaUCGCGUGGacgauuGGCGCGCaugGACc -3'
miRNA:   3'- uCCGCG--------AGCGCGUCgu----CCGCGCG---CUG- -5'
24101 5' -63.9 NC_005262.1 + 10560 0.66 0.332107
Target:  5'- cGGC-CgCGCGCAGCcgcagcguaccgcGGaGCaGCGCGGCg -3'
miRNA:   3'- uCCGcGaGCGCGUCG-------------UC-CG-CGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 62672 0.66 0.332871
Target:  5'- uGGGUuuaGUcCGCccggcgGCGGCAGGggaGCGCGACg -3'
miRNA:   3'- -UCCG---CGaGCG------CGUCGUCCg--CGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 34993 0.66 0.317831
Target:  5'- cAGGCaGC-CGgGCAGCAG-CGCG-GGCc -3'
miRNA:   3'- -UCCG-CGaGCgCGUCGUCcGCGCgCUG- -5'
24101 5' -63.9 NC_005262.1 + 50871 0.66 0.317831
Target:  5'- cAGGUGC-CGaCGCAaucGCAcGGCGCGCc-- -3'
miRNA:   3'- -UCCGCGaGC-GCGU---CGU-CCGCGCGcug -5'
24101 5' -63.9 NC_005262.1 + 59711 0.66 0.29206
Target:  5'- cGGGCGCUaCGuCGcCGGCaAGGUGUacaacgugguggaugGCGGCg -3'
miRNA:   3'- -UCCGCGA-GC-GC-GUCG-UCCGCG---------------CGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.