miRNA display CGI


Results 1 - 20 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24101 5' -63.9 NC_005262.1 + 724 0.68 0.23834
Target:  5'- -aGCGCUUGUGcCAGCAGGUaUGCGuCg -3'
miRNA:   3'- ucCGCGAGCGC-GUCGUCCGcGCGCuG- -5'
24101 5' -63.9 NC_005262.1 + 1061 0.68 0.23834
Target:  5'- cGGCGCUgaccgccagCGCGCcgaucaGGguGcGUGCGCGAUu -3'
miRNA:   3'- uCCGCGA---------GCGCG------UCguC-CGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 2022 0.68 0.226833
Target:  5'- cGGCGCugcuUCGUGCuGCucgacgGGGCGCGUaGCg -3'
miRNA:   3'- uCCGCG----AGCGCGuCG------UCCGCGCGcUG- -5'
24101 5' -63.9 NC_005262.1 + 2983 0.66 0.303307
Target:  5'- cGGCGCaaacUCuGCGaCAGCGGaacgcgcaGCGUGUGACu -3'
miRNA:   3'- uCCGCG----AG-CGC-GUCGUC--------CGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 3163 0.66 0.332871
Target:  5'- cGGUGCUCGcCGCucgcCAGcGUGCGCauGGCg -3'
miRNA:   3'- uCCGCGAGC-GCGuc--GUC-CGCGCG--CUG- -5'
24101 5' -63.9 NC_005262.1 + 3315 0.7 0.177993
Target:  5'- cGGCGUcucgcccugaUCGCGCAGCgucauguagagcgacAGGCGCaGCG-Cg -3'
miRNA:   3'- uCCGCG----------AGCGCGUCG---------------UCCGCG-CGCuG- -5'
24101 5' -63.9 NC_005262.1 + 3822 0.68 0.231952
Target:  5'- cGGGUGCaugCGCGCcugaucgAGCGGGCGaaucugcuuCGCGAg -3'
miRNA:   3'- -UCCGCGa--GCGCG-------UCGUCCGC---------GCGCUg -5'
24101 5' -63.9 NC_005262.1 + 4563 0.69 0.200113
Target:  5'- cGGCGCaucUCGCGcCAGC-GGCgGCGCuGCu -3'
miRNA:   3'- uCCGCG---AGCGC-GUCGuCCG-CGCGcUG- -5'
24101 5' -63.9 NC_005262.1 + 4594 0.67 0.282488
Target:  5'- cGGGCGUgagCGCccGCAGgaaCGGGCG-GUGACg -3'
miRNA:   3'- -UCCGCGa--GCG--CGUC---GUCCGCgCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 4610 0.69 0.190215
Target:  5'- aAGGCGCUCcauCAGCGGGCcCGUGAg -3'
miRNA:   3'- -UCCGCGAGcgcGUCGUCCGcGCGCUg -5'
24101 5' -63.9 NC_005262.1 + 4892 0.68 0.23834
Target:  5'- cGGGcCGCcggccugaUCGCGCAGCGcGGCagcagccaacGCGCGGa -3'
miRNA:   3'- -UCC-GCG--------AGCGCGUCGU-CCG----------CGCGCUg -5'
24101 5' -63.9 NC_005262.1 + 5063 0.74 0.077376
Target:  5'- cGGGCagGCcCGCgGCGGCGGcGCGUGCGACc -3'
miRNA:   3'- -UCCG--CGaGCG-CGUCGUC-CGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 5189 0.76 0.062185
Target:  5'- cGGGCGCggGCGCGGCcGGCGCGaccgagGGCg -3'
miRNA:   3'- -UCCGCGagCGCGUCGuCCGCGCg-----CUG- -5'
24101 5' -63.9 NC_005262.1 + 5595 0.69 0.200113
Target:  5'- cGGCGC-CGCuCuccGCAGGCGaCGCGGa -3'
miRNA:   3'- uCCGCGaGCGcGu--CGUCCGC-GCGCUg -5'
24101 5' -63.9 NC_005262.1 + 6505 0.73 0.106971
Target:  5'- cGGCGCUCGUucugcuGCAcGCGGGCcgugagcuGCGCGAg -3'
miRNA:   3'- uCCGCGAGCG------CGU-CGUCCG--------CGCGCUg -5'
24101 5' -63.9 NC_005262.1 + 7525 0.68 0.23834
Target:  5'- cGGGCagGUUCG-GCGGCGcgucGGCGCGCucGACg -3'
miRNA:   3'- -UCCG--CGAGCgCGUCGU----CCGCGCG--CUG- -5'
24101 5' -63.9 NC_005262.1 + 8146 0.66 0.303307
Target:  5'- cGGCGUgccgGaCGCGGCcacGaGCGCGCGGCc -3'
miRNA:   3'- uCCGCGag--C-GCGUCGu--C-CGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 8411 0.68 0.232527
Target:  5'- cGGCGCUCGauCuGCuuGCGCGUGAUc -3'
miRNA:   3'- uCCGCGAGCgcGuCGucCGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 8835 0.68 0.244275
Target:  5'- uGGCGCgcuucugguuuUCGCGCAGguugaaGCGCaGCGACa -3'
miRNA:   3'- uCCGCG-----------AGCGCGUCguc---CGCG-CGCUG- -5'
24101 5' -63.9 NC_005262.1 + 9368 0.67 0.262818
Target:  5'- cGGCGCgCGCgGCGGCcuGCGCcuccGCGAg -3'
miRNA:   3'- uCCGCGaGCG-CGUCGucCGCG----CGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.