Results 1 - 20 of 199 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24101 | 5' | -63.9 | NC_005262.1 | + | 59385 | 1.09 | 0.000163 |
Target: 5'- cAGGCGCUCGCGCAGCAGGCGCGCGACa -3' miRNA: 3'- -UCCGCGAGCGCGUCGUCCGCGCGCUG- -5' |
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24101 | 5' | -63.9 | NC_005262.1 | + | 13462 | 0.86 | 0.00985 |
Target: 5'- cGGGCGCUucguccUGCGCGGCGGGCGCuGCGGCc -3' miRNA: 3'- -UCCGCGA------GCGCGUCGUCCGCG-CGCUG- -5' |
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24101 | 5' | -63.9 | NC_005262.1 | + | 15726 | 0.83 | 0.016814 |
Target: 5'- cGGGCgGCUCGuCGCGGCAGGUGCGacCGACg -3' miRNA: 3'- -UCCG-CGAGC-GCGUCGUCCGCGC--GCUG- -5' |
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24101 | 5' | -63.9 | NC_005262.1 | + | 34479 | 0.82 | 0.022258 |
Target: 5'- cGGCGUUcgagcacaucCGCGCGGC-GGCGCGCGACu -3' miRNA: 3'- uCCGCGA----------GCGCGUCGuCCGCGCGCUG- -5' |
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24101 | 5' | -63.9 | NC_005262.1 | + | 53005 | 0.82 | 0.022258 |
Target: 5'- cGGCaGCUCGCGCAGCAGuaccGCGCGCccGGCg -3' miRNA: 3'- uCCG-CGAGCGCGUCGUC----CGCGCG--CUG- -5' |
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24101 | 5' | -63.9 | NC_005262.1 | + | 39719 | 0.81 | 0.024208 |
Target: 5'- uGGUGUgaUCGCGCAGCAGGCGCaGCG-Ca -3' miRNA: 3'- uCCGCG--AGCGCGUCGUCCGCG-CGCuG- -5' |
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24101 | 5' | -63.9 | NC_005262.1 | + | 12805 | 0.8 | 0.028628 |
Target: 5'- uGGGCGg-CGCGCAGCcGGCGCGUGAa -3' miRNA: 3'- -UCCGCgaGCGCGUCGuCCGCGCGCUg -5' |
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24101 | 5' | -63.9 | NC_005262.1 | + | 45629 | 0.8 | 0.029439 |
Target: 5'- gGGGCGCUCGCGCgaucaGGCGGGCaCGCG-Cu -3' miRNA: 3'- -UCCGCGAGCGCG-----UCGUCCGcGCGCuG- -5' |
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24101 | 5' | -63.9 | NC_005262.1 | + | 15588 | 0.79 | 0.035778 |
Target: 5'- gAGGCGCgcgCGCGCgAGgAGcGCGUGCGGCa -3' miRNA: 3'- -UCCGCGa--GCGCG-UCgUC-CGCGCGCUG- -5' |
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24101 | 5' | -63.9 | NC_005262.1 | + | 45157 | 0.78 | 0.042265 |
Target: 5'- aAGGCGCUCGCGCuGCGuGCGgaCGCGAUc -3' miRNA: 3'- -UCCGCGAGCGCGuCGUcCGC--GCGCUG- -5' |
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24101 | 5' | -63.9 | NC_005262.1 | + | 61148 | 0.77 | 0.045926 |
Target: 5'- uGGCGCagcagaUCGCgGCGGCgggcgagcugacGGGCGCGCGGCg -3' miRNA: 3'- uCCGCG------AGCG-CGUCG------------UCCGCGCGCUG- -5' |
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24101 | 5' | -63.9 | NC_005262.1 | + | 10949 | 0.76 | 0.054051 |
Target: 5'- -cGCGCUaCGCGCAGCAGGCauucgcgcugucgGCGCGcCg -3' miRNA: 3'- ucCGCGA-GCGCGUCGUCCG-------------CGCGCuG- -5' |
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24101 | 5' | -63.9 | NC_005262.1 | + | 17081 | 0.76 | 0.0542 |
Target: 5'- uAGGCGCgcccgUCGaCGCGGCGGGC-CGCGAg -3' miRNA: 3'- -UCCGCG-----AGC-GCGUCGUCCGcGCGCUg -5' |
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24101 | 5' | -63.9 | NC_005262.1 | + | 59948 | 0.76 | 0.059513 |
Target: 5'- gAGGCGCUCGCgaaGCAGauucgcccgcucgauCAGGCGCGCa-- -3' miRNA: 3'- -UCCGCGAGCG---CGUC---------------GUCCGCGCGcug -5' |
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24101 | 5' | -63.9 | NC_005262.1 | + | 5189 | 0.76 | 0.062185 |
Target: 5'- cGGGCGCggGCGCGGCcGGCGCGaccgagGGCg -3' miRNA: 3'- -UCCGCGagCGCGUCGuCCGCGCg-----CUG- -5' |
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24101 | 5' | -63.9 | NC_005262.1 | + | 12319 | 0.75 | 0.071302 |
Target: 5'- cGGCaugcgGCUCGUGCcGCA-GCGCGCGGCg -3' miRNA: 3'- uCCG-----CGAGCGCGuCGUcCGCGCGCUG- -5' |
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24101 | 5' | -63.9 | NC_005262.1 | + | 49230 | 0.75 | 0.075298 |
Target: 5'- cGGCGg-CGCGCAGUccGCGCGCGAg -3' miRNA: 3'- uCCGCgaGCGCGUCGucCGCGCGCUg -5' |
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24101 | 5' | -63.9 | NC_005262.1 | + | 49303 | 0.75 | 0.076123 |
Target: 5'- gAGGCGUUCcagcaguucaagGCGCAgggcaugaccgacgaGCAGGCGCGCGcCg -3' miRNA: 3'- -UCCGCGAG------------CGCGU---------------CGUCCGCGCGCuG- -5' |
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24101 | 5' | -63.9 | NC_005262.1 | + | 5063 | 0.74 | 0.077376 |
Target: 5'- cGGGCagGCcCGCgGCGGCGGcGCGUGCGACc -3' miRNA: 3'- -UCCG--CGaGCG-CGUCGUC-CGCGCGCUG- -5' |
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24101 | 5' | -63.9 | NC_005262.1 | + | 30876 | 0.74 | 0.079508 |
Target: 5'- aAGGCGCUgGCG-AGCGucGcGCGUGCGACg -3' miRNA: 3'- -UCCGCGAgCGCgUCGU--C-CGCGCGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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