miRNA display CGI


Results 1 - 20 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24101 5' -63.9 NC_005262.1 + 44151 0.74 0.091039
Target:  5'- cGGaCGCgCGCGCgaucgGGCAGGaGCGCGGCg -3'
miRNA:   3'- uCC-GCGaGCGCG-----UCGUCCgCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 49230 0.75 0.075298
Target:  5'- cGGCGg-CGCGCAGUccGCGCGCGAg -3'
miRNA:   3'- uCCGCgaGCGCGUCGucCGCGCGCUg -5'
24101 5' -63.9 NC_005262.1 + 49303 0.75 0.076123
Target:  5'- gAGGCGUUCcagcaguucaagGCGCAgggcaugaccgacgaGCAGGCGCGCGcCg -3'
miRNA:   3'- -UCCGCGAG------------CGCGU---------------CGUCCGCGCGCuG- -5'
24101 5' -63.9 NC_005262.1 + 5063 0.74 0.077376
Target:  5'- cGGGCagGCcCGCgGCGGCGGcGCGUGCGACc -3'
miRNA:   3'- -UCCG--CGaGCG-CGUCGUC-CGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 26152 0.74 0.086247
Target:  5'- uGGGUGCUccaaCGCGUcgAGCAcgaguGGCGCGCGAUc -3'
miRNA:   3'- -UCCGCGA----GCGCG--UCGU-----CCGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 24731 0.74 0.086247
Target:  5'- -cGCGCUgGCGCGcGCGaucGGCGUGCGGCc -3'
miRNA:   3'- ucCGCGAgCGCGU-CGU---CCGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 18726 0.74 0.088612
Target:  5'- aAGGCGCUCcucagcuucgGCGCGGCucGGCGCGUcguaGAUg -3'
miRNA:   3'- -UCCGCGAG----------CGCGUCGu-CCGCGCG----CUG- -5'
24101 5' -63.9 NC_005262.1 + 44974 0.74 0.088612
Target:  5'- gAGGCGagggccgaCGUGCAGCAGucCGCGCGGCa -3'
miRNA:   3'- -UCCGCga------GCGCGUCGUCc-GCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 43837 0.74 0.088612
Target:  5'- cGGGCcgGCcgCGCGCGGCGGuGCGC-CGGCa -3'
miRNA:   3'- -UCCG--CGa-GCGCGUCGUC-CGCGcGCUG- -5'
24101 5' -63.9 NC_005262.1 + 12319 0.75 0.071302
Target:  5'- cGGCaugcgGCUCGUGCcGCA-GCGCGCGGCg -3'
miRNA:   3'- uCCG-----CGAGCGCGuCGUcCGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 5189 0.76 0.062185
Target:  5'- cGGGCGCggGCGCGGCcGGCGCGaccgagGGCg -3'
miRNA:   3'- -UCCGCGagCGCGUCGuCCGCGCg-----CUG- -5'
24101 5' -63.9 NC_005262.1 + 59948 0.76 0.059513
Target:  5'- gAGGCGCUCGCgaaGCAGauucgcccgcucgauCAGGCGCGCa-- -3'
miRNA:   3'- -UCCGCGAGCG---CGUC---------------GUCCGCGCGcug -5'
24101 5' -63.9 NC_005262.1 + 34479 0.82 0.022258
Target:  5'- cGGCGUUcgagcacaucCGCGCGGC-GGCGCGCGACu -3'
miRNA:   3'- uCCGCGA----------GCGCGUCGuCCGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 39719 0.81 0.024208
Target:  5'- uGGUGUgaUCGCGCAGCAGGCGCaGCG-Ca -3'
miRNA:   3'- uCCGCG--AGCGCGUCGUCCGCG-CGCuG- -5'
24101 5' -63.9 NC_005262.1 + 12805 0.8 0.028628
Target:  5'- uGGGCGg-CGCGCAGCcGGCGCGUGAa -3'
miRNA:   3'- -UCCGCgaGCGCGUCGuCCGCGCGCUg -5'
24101 5' -63.9 NC_005262.1 + 15588 0.79 0.035778
Target:  5'- gAGGCGCgcgCGCGCgAGgAGcGCGUGCGGCa -3'
miRNA:   3'- -UCCGCGa--GCGCG-UCgUC-CGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 45157 0.78 0.042265
Target:  5'- aAGGCGCUCGCGCuGCGuGCGgaCGCGAUc -3'
miRNA:   3'- -UCCGCGAGCGCGuCGUcCGC--GCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 61148 0.77 0.045926
Target:  5'- uGGCGCagcagaUCGCgGCGGCgggcgagcugacGGGCGCGCGGCg -3'
miRNA:   3'- uCCGCG------AGCG-CGUCG------------UCCGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 10949 0.76 0.054051
Target:  5'- -cGCGCUaCGCGCAGCAGGCauucgcgcugucgGCGCGcCg -3'
miRNA:   3'- ucCGCGA-GCGCGUCGUCCG-------------CGCGCuG- -5'
24101 5' -63.9 NC_005262.1 + 17081 0.76 0.0542
Target:  5'- uAGGCGCgcccgUCGaCGCGGCGGGC-CGCGAg -3'
miRNA:   3'- -UCCGCG-----AGC-GCGUCGUCCGcGCGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.