miRNA display CGI


Results 21 - 40 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24101 5' -63.9 NC_005262.1 + 9935 0.66 0.310504
Target:  5'- cGGCGCaaaGCGCAGC--GCGCuGaCGGCg -3'
miRNA:   3'- uCCGCGag-CGCGUCGucCGCG-C-GCUG- -5'
24101 5' -63.9 NC_005262.1 + 10441 0.74 0.088612
Target:  5'- uGGCGCcgaucagguUCGCGCGGUcGGCGagguaGCGGCg -3'
miRNA:   3'- uCCGCG---------AGCGCGUCGuCCGCg----CGCUG- -5'
24101 5' -63.9 NC_005262.1 + 10560 0.66 0.332107
Target:  5'- cGGC-CgCGCGCAGCcgcagcguaccgcGGaGCaGCGCGGCg -3'
miRNA:   3'- uCCGcGaGCGCGUCG-------------UC-CG-CGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 10949 0.76 0.054051
Target:  5'- -cGCGCUaCGCGCAGCAGGCauucgcgcugucgGCGCGcCg -3'
miRNA:   3'- ucCGCGA-GCGCGUCGUCCG-------------CGCGCuG- -5'
24101 5' -63.9 NC_005262.1 + 11415 0.73 0.101389
Target:  5'- -cGCGC-CGCGCcgGGCcgccgaAGGUGCGCGACa -3'
miRNA:   3'- ucCGCGaGCGCG--UCG------UCCGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 11473 0.68 0.23834
Target:  5'- -cGCGCUCGCGCgcgAGCacauGGGC-CGCGuCg -3'
miRNA:   3'- ucCGCGAGCGCG---UCG----UCCGcGCGCuG- -5'
24101 5' -63.9 NC_005262.1 + 11874 0.7 0.163065
Target:  5'- cGGCGacguguaUCGCGCgaaAGguGGC-CGCGGCa -3'
miRNA:   3'- uCCGCg------AGCGCG---UCguCCGcGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 12103 0.7 0.167334
Target:  5'- cGGGCGCaaUCaGCGCcGCcGuGCGCGCGAg -3'
miRNA:   3'- -UCCGCG--AG-CGCGuCGuC-CGCGCGCUg -5'
24101 5' -63.9 NC_005262.1 + 12175 0.69 0.199608
Target:  5'- -cGCGCUgucUGCGCGGCAGGagcaaauCGCGCaGAUg -3'
miRNA:   3'- ucCGCGA---GCGCGUCGUCC-------GCGCG-CUG- -5'
24101 5' -63.9 NC_005262.1 + 12223 0.71 0.132303
Target:  5'- uGGGCGg-CGCGCucaAGCuccGCGCGCGACc -3'
miRNA:   3'- -UCCGCgaGCGCG---UCGuc-CGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 12319 0.75 0.071302
Target:  5'- cGGCaugcgGCUCGUGCcGCA-GCGCGCGGCg -3'
miRNA:   3'- uCCG-----CGAGCGCGuCGUcCGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 12478 0.7 0.158893
Target:  5'- gGGGCGC-CGCGCGGCAuaCGCaGUGAg -3'
miRNA:   3'- -UCCGCGaGCGCGUCGUccGCG-CGCUg -5'
24101 5' -63.9 NC_005262.1 + 12567 0.69 0.197098
Target:  5'- cGGCGCUCGUcgagcugcugcugccGcCGGCgAGGCGuCGCGGa -3'
miRNA:   3'- uCCGCGAGCG---------------C-GUCG-UCCGC-GCGCUg -5'
24101 5' -63.9 NC_005262.1 + 12639 0.66 0.325286
Target:  5'- cGGCaccGUgaagaagaagCGCGC-GC-GGCGCGCGGCg -3'
miRNA:   3'- uCCG---CGa---------GCGCGuCGuCCGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 12805 0.8 0.028628
Target:  5'- uGGGCGg-CGCGCAGCcGGCGCGUGAa -3'
miRNA:   3'- -UCCGCgaGCGCGUCGuCCGCGCGCUg -5'
24101 5' -63.9 NC_005262.1 + 12932 0.68 0.232527
Target:  5'- -uGCGCggCGCGCugaaGGGCguGCGCGACg -3'
miRNA:   3'- ucCGCGa-GCGCGucg-UCCG--CGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 13008 0.66 0.303307
Target:  5'- uGGGUGUaCGCGCAGgA-GCGCGCcaagGGCu -3'
miRNA:   3'- -UCCGCGaGCGCGUCgUcCGCGCG----CUG- -5'
24101 5' -63.9 NC_005262.1 + 13202 0.68 0.215799
Target:  5'- -aGCGCUCGCGCuacCGGGUugaGCGGCa -3'
miRNA:   3'- ucCGCGAGCGCGuc-GUCCGcg-CGCUG- -5'
24101 5' -63.9 NC_005262.1 + 13231 0.67 0.250333
Target:  5'- cGG-GCUCGgGCuGCgguugaacGGGUGCGCGAg -3'
miRNA:   3'- uCCgCGAGCgCGuCG--------UCCGCGCGCUg -5'
24101 5' -63.9 NC_005262.1 + 13399 0.66 0.317831
Target:  5'- cGGCGCUgaucgcCGCGCGGUucGCGuCGCcACg -3'
miRNA:   3'- uCCGCGA------GCGCGUCGucCGC-GCGcUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.