miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24102 5' -54.8 NC_005262.1 + 17474 0.7 0.561296
Target:  5'- cCGagUUCCAGGACGaagcgcgcgcCGCGCGCGACg -3'
miRNA:   3'- -GUagGAGGUCUUGUa---------GCGCGCGCUGa -5'
24102 5' -54.8 NC_005262.1 + 19169 0.66 0.795246
Target:  5'- -cUCCUCCcauGCcUUGCGCGCGGg- -3'
miRNA:   3'- guAGGAGGucuUGuAGCGCGCGCUga -5'
24102 5' -54.8 NC_005262.1 + 19949 0.69 0.582917
Target:  5'- gGUCCUgCCGGccacCGcCGCGCGCGGCc -3'
miRNA:   3'- gUAGGA-GGUCuu--GUaGCGCGCGCUGa -5'
24102 5' -54.8 NC_005262.1 + 20820 0.67 0.724082
Target:  5'- aAUCgaCagGGAACAUCGCgggGCGCGGCa -3'
miRNA:   3'- gUAGgaGg-UCUUGUAGCG---CGCGCUGa -5'
24102 5' -54.8 NC_005262.1 + 21744 0.69 0.593792
Target:  5'- ---gCUCaCGGAAgAUCGCGCaGCGGCa -3'
miRNA:   3'- guagGAG-GUCUUgUAGCGCG-CGCUGa -5'
24102 5' -54.8 NC_005262.1 + 25530 0.69 0.582917
Target:  5'- gCAUCCgcgUCGcGACGUcCGUGCGCGGCg -3'
miRNA:   3'- -GUAGGa--GGUcUUGUA-GCGCGCGCUGa -5'
24102 5' -54.8 NC_005262.1 + 26434 0.67 0.710261
Target:  5'- uCGUCCUuCCAGAaugaccagaagugcACGUCGaaGCGCGAa- -3'
miRNA:   3'- -GUAGGA-GGUCU--------------UGUAGCg-CGCGCUga -5'
24102 5' -54.8 NC_005262.1 + 28056 0.66 0.795246
Target:  5'- aCAUCCUCUGGGACAgcaCGUaccGC-CGGCUc -3'
miRNA:   3'- -GUAGGAGGUCUUGUa--GCG---CGcGCUGA- -5'
24102 5' -54.8 NC_005262.1 + 28149 0.66 0.75535
Target:  5'- cCAUCUUCCccGAGCGcgcggcgcaacUGCGCGCGGCg -3'
miRNA:   3'- -GUAGGAGGu-CUUGUa----------GCGCGCGCUGa -5'
24102 5' -54.8 NC_005262.1 + 28566 0.67 0.73461
Target:  5'- --gCUUCC---GCcgCGCGCGCGACg -3'
miRNA:   3'- guaGGAGGucuUGuaGCGCGCGCUGa -5'
24102 5' -54.8 NC_005262.1 + 29992 0.68 0.6594
Target:  5'- uCGUCCUggAGGACGUUGCccGCGCGAg- -3'
miRNA:   3'- -GUAGGAggUCUUGUAGCG--CGCGCUga -5'
24102 5' -54.8 NC_005262.1 + 31772 0.75 0.300952
Target:  5'- aCAUCCgCC---GCAUCGCGCGCGAUc -3'
miRNA:   3'- -GUAGGaGGucuUGUAGCGCGCGCUGa -5'
24102 5' -54.8 NC_005262.1 + 32013 0.66 0.745037
Target:  5'- aGUCa-CCGaGACgAUCGCGCGCGAUg -3'
miRNA:   3'- gUAGgaGGUcUUG-UAGCGCGCGCUGa -5'
24102 5' -54.8 NC_005262.1 + 32903 0.67 0.691998
Target:  5'- --gCCaagCCGGcGGCGUCGCacGCGCGACg -3'
miRNA:   3'- guaGGa--GGUC-UUGUAGCG--CGCGCUGa -5'
24102 5' -54.8 NC_005262.1 + 33317 0.66 0.794279
Target:  5'- cCGUCgagUCGGAcgcaacuGCGUCGCuGCGCGGCa -3'
miRNA:   3'- -GUAGga-GGUCU-------UGUAGCG-CGCGCUGa -5'
24102 5' -54.8 NC_005262.1 + 33869 0.66 0.75535
Target:  5'- uCGUCCUUCAGGcUAUCGCcgaGCGUGGu- -3'
miRNA:   3'- -GUAGGAGGUCUuGUAGCG---CGCGCUga -5'
24102 5' -54.8 NC_005262.1 + 35823 0.66 0.775591
Target:  5'- gCAUCaugggCCGGAgcgGCGUCgGCGCcGCGACc -3'
miRNA:   3'- -GUAGga---GGUCU---UGUAG-CGCG-CGCUGa -5'
24102 5' -54.8 NC_005262.1 + 36798 0.72 0.400552
Target:  5'- -uUCCUCCAGuGCggCGCGCuCGGCg -3'
miRNA:   3'- guAGGAGGUCuUGuaGCGCGcGCUGa -5'
24102 5' -54.8 NC_005262.1 + 37855 0.74 0.339169
Target:  5'- -uUCCUcguugCCGGAaaagucgGCGUCGCGCGUGGCg -3'
miRNA:   3'- guAGGA-----GGUCU-------UGUAGCGCGCGCUGa -5'
24102 5' -54.8 NC_005262.1 + 38695 0.7 0.518786
Target:  5'- uCAUCCUCCGuGAGCggCGCGuCGuCGugUu -3'
miRNA:   3'- -GUAGGAGGU-CUUGuaGCGC-GC-GCugA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.