miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24102 5' -54.8 NC_005262.1 + 1173 0.66 0.775591
Target:  5'- cCAUCCUgcgcggaagcCCAGuGCGaguUCGcCGCGCGAUUc -3'
miRNA:   3'- -GUAGGA----------GGUCuUGU---AGC-GCGCGCUGA- -5'
24102 5' -54.8 NC_005262.1 + 1763 0.69 0.582917
Target:  5'- gCAUCgaggaGGAGgAUCGCGCGCGGCg -3'
miRNA:   3'- -GUAGgagg-UCUUgUAGCGCGCGCUGa -5'
24102 5' -54.8 NC_005262.1 + 3457 0.73 0.373765
Target:  5'- cCGUCCUUCAGGuaGCcgCGCGCGCcguaGGCg -3'
miRNA:   3'- -GUAGGAGGUCU--UGuaGCGCGCG----CUGa -5'
24102 5' -54.8 NC_005262.1 + 3718 0.75 0.272286
Target:  5'- --cCCgUCAGcGCGUCGCGCGCGGCg -3'
miRNA:   3'- guaGGaGGUCuUGUAGCGCGCGCUGa -5'
24102 5' -54.8 NC_005262.1 + 3809 0.66 0.781554
Target:  5'- cCAUCCUcgacggcCCGGAggaaggugccgagcGCccCGCGCGUGACg -3'
miRNA:   3'- -GUAGGA-------GGUCU--------------UGuaGCGCGCGCUGa -5'
24102 5' -54.8 NC_005262.1 + 4647 0.7 0.508352
Target:  5'- gCGUCCUCCA------UGCGCGCGGCg -3'
miRNA:   3'- -GUAGGAGGUcuuguaGCGCGCGCUGa -5'
24102 5' -54.8 NC_005262.1 + 5895 0.68 0.68009
Target:  5'- uGUCCUUCGGGuuCGUUGCGCGaucuucaCGACg -3'
miRNA:   3'- gUAGGAGGUCUu-GUAGCGCGC-------GCUGa -5'
24102 5' -54.8 NC_005262.1 + 6226 0.68 0.670305
Target:  5'- uCAUCCggagCCGcgucGAACGUCucgauGCGCGUGACc -3'
miRNA:   3'- -GUAGGa---GGU----CUUGUAG-----CGCGCGCUGa -5'
24102 5' -54.8 NC_005262.1 + 8204 0.66 0.765539
Target:  5'- --aCCUUCAuGAACAgguccaUCGCGCGCuGCg -3'
miRNA:   3'- guaGGAGGU-CUUGU------AGCGCGCGcUGa -5'
24102 5' -54.8 NC_005262.1 + 9359 0.7 0.5399
Target:  5'- --aCUUCCGGu-CggCGCGCGCGGCg -3'
miRNA:   3'- guaGGAGGUCuuGuaGCGCGCGCUGa -5'
24102 5' -54.8 NC_005262.1 + 9388 0.66 0.785498
Target:  5'- --gCCUCCGcGAGC-UUGCGCaCGACg -3'
miRNA:   3'- guaGGAGGU-CUUGuAGCGCGcGCUGa -5'
24102 5' -54.8 NC_005262.1 + 11336 0.75 0.293574
Target:  5'- -cUCCUCCGcaaGACGccgcUCGCGCGCGGCa -3'
miRNA:   3'- guAGGAGGUc--UUGU----AGCGCGCGCUGa -5'
24102 5' -54.8 NC_005262.1 + 11676 0.66 0.785498
Target:  5'- --gCCggCAGAGCuUCGCGCGCaACUu -3'
miRNA:   3'- guaGGagGUCUUGuAGCGCGCGcUGA- -5'
24102 5' -54.8 NC_005262.1 + 11933 0.66 0.745037
Target:  5'- cCAUCgUCgGGAACAUgGCGCacGCG-CUg -3'
miRNA:   3'- -GUAGgAGgUCUUGUAgCGCG--CGCuGA- -5'
24102 5' -54.8 NC_005262.1 + 12467 0.66 0.745037
Target:  5'- aCGUCgCUCaCGGGGCG-C-CGCGCGGCa -3'
miRNA:   3'- -GUAG-GAG-GUCUUGUaGcGCGCGCUGa -5'
24102 5' -54.8 NC_005262.1 + 12722 0.69 0.604699
Target:  5'- gCGUCCcgCCGGAGCAcCGCGUcaucggucaGUGGCUg -3'
miRNA:   3'- -GUAGGa-GGUCUUGUaGCGCG---------CGCUGA- -5'
24102 5' -54.8 NC_005262.1 + 14018 0.67 0.687675
Target:  5'- gCGUCCggcgcggcagcggCCGGAGCcUCGgGCGCGGg- -3'
miRNA:   3'- -GUAGGa------------GGUCUUGuAGCgCGCGCUga -5'
24102 5' -54.8 NC_005262.1 + 15070 0.66 0.775591
Target:  5'- aCAUCCgacacguugucCCAGAACGaCGCgucuuucugcgGCGCGGCg -3'
miRNA:   3'- -GUAGGa----------GGUCUUGUaGCG-----------CGCGCUGa -5'
24102 5' -54.8 NC_005262.1 + 17070 0.66 0.776589
Target:  5'- gAUCCggucgugCCGGAuuGCGccggcuuguccacugCGCGCGCGGCg -3'
miRNA:   3'- gUAGGa------GGUCU--UGUa--------------GCGCGCGCUGa -5'
24102 5' -54.8 NC_005262.1 + 17237 0.71 0.487758
Target:  5'- gGUCgUCguGGGCGUCGCGggaGCGGCg -3'
miRNA:   3'- gUAGgAGguCUUGUAGCGCg--CGCUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.