miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24102 5' -54.8 NC_005262.1 + 59575 1.08 0.001452
Target:  5'- aCAUCCUCCAGAACAUCGCGCGCGACUa -3'
miRNA:   3'- -GUAGGAGGUCUUGUAGCGCGCGCUGA- -5'
24102 5' -54.8 NC_005262.1 + 3718 0.75 0.272286
Target:  5'- --cCCgUCAGcGCGUCGCGCGCGGCg -3'
miRNA:   3'- guaGGaGGUCuUGUAGCGCGCGCUGa -5'
24102 5' -54.8 NC_005262.1 + 60066 0.75 0.279241
Target:  5'- uCAUCCUgCGcAACGcCGCGCGCGACg -3'
miRNA:   3'- -GUAGGAgGUcUUGUaGCGCGCGCUGa -5'
24102 5' -54.8 NC_005262.1 + 11336 0.75 0.293574
Target:  5'- -cUCCUCCGcaaGACGccgcUCGCGCGCGGCa -3'
miRNA:   3'- guAGGAGGUc--UUGU----AGCGCGCGCUGa -5'
24102 5' -54.8 NC_005262.1 + 31772 0.75 0.300952
Target:  5'- aCAUCCgCC---GCAUCGCGCGCGAUc -3'
miRNA:   3'- -GUAGGaGGucuUGUAGCGCGCGCUGa -5'
24102 5' -54.8 NC_005262.1 + 37855 0.74 0.339169
Target:  5'- -uUCCUcguugCCGGAaaagucgGCGUCGCGCGUGGCg -3'
miRNA:   3'- guAGGA-----GGUCU-------UGUAGCGCGCGCUGa -5'
24102 5' -54.8 NC_005262.1 + 46284 0.73 0.36511
Target:  5'- gCAUCgUCguCAGGcugccgaucgacGCGUCGCGCGCGGCg -3'
miRNA:   3'- -GUAGgAG--GUCU------------UGUAGCGCGCGCUGa -5'
24102 5' -54.8 NC_005262.1 + 3457 0.73 0.373765
Target:  5'- cCGUCCUUCAGGuaGCcgCGCGCGCcguaGGCg -3'
miRNA:   3'- -GUAGGAGGUCU--UGuaGCGCGCG----CUGa -5'
24102 5' -54.8 NC_005262.1 + 36798 0.72 0.400552
Target:  5'- -uUCCUCCAGuGCggCGCGCuCGGCg -3'
miRNA:   3'- guAGGAGGUCuUGuaGCGCGcGCUGa -5'
24102 5' -54.8 NC_005262.1 + 51311 0.72 0.428531
Target:  5'- -cUCgaCCAGAugggcGCAUcCGCGCGCGGCa -3'
miRNA:   3'- guAGgaGGUCU-----UGUA-GCGCGCGCUGa -5'
24102 5' -54.8 NC_005262.1 + 17237 0.71 0.487758
Target:  5'- gGUCgUCguGGGCGUCGCGggaGCGGCg -3'
miRNA:   3'- gUAGgAGguCUUGUAGCGCg--CGCUGa -5'
24102 5' -54.8 NC_005262.1 + 4647 0.7 0.508352
Target:  5'- gCGUCCUCCA------UGCGCGCGGCg -3'
miRNA:   3'- -GUAGGAGGUcuuguaGCGCGCGCUGa -5'
24102 5' -54.8 NC_005262.1 + 38695 0.7 0.518786
Target:  5'- uCAUCCUCCGuGAGCggCGCGuCGuCGugUu -3'
miRNA:   3'- -GUAGGAGGU-CUUGuaGCGC-GC-GCugA- -5'
24102 5' -54.8 NC_005262.1 + 9359 0.7 0.5399
Target:  5'- --aCUUCCGGu-CggCGCGCGCGGCg -3'
miRNA:   3'- guaGGAGGUCuuGuaGCGCGCGCUGa -5'
24102 5' -54.8 NC_005262.1 + 17474 0.7 0.561296
Target:  5'- cCGagUUCCAGGACGaagcgcgcgcCGCGCGCGACg -3'
miRNA:   3'- -GUagGAGGUCUUGUa---------GCGCGCGCUGa -5'
24102 5' -54.8 NC_005262.1 + 58961 0.69 0.572082
Target:  5'- aAUCCaCCGGAaaggcacuGCGUCGCGC-CGGCg -3'
miRNA:   3'- gUAGGaGGUCU--------UGUAGCGCGcGCUGa -5'
24102 5' -54.8 NC_005262.1 + 19949 0.69 0.582917
Target:  5'- gGUCCUgCCGGccacCGcCGCGCGCGGCc -3'
miRNA:   3'- gUAGGA-GGUCuu--GUaGCGCGCGCUGa -5'
24102 5' -54.8 NC_005262.1 + 1763 0.69 0.582917
Target:  5'- gCAUCgaggaGGAGgAUCGCGCGCGGCg -3'
miRNA:   3'- -GUAGgagg-UCUUgUAGCGCGCGCUGa -5'
24102 5' -54.8 NC_005262.1 + 25530 0.69 0.582917
Target:  5'- gCAUCCgcgUCGcGACGUcCGUGCGCGGCg -3'
miRNA:   3'- -GUAGGa--GGUcUUGUA-GCGCGCGCUGa -5'
24102 5' -54.8 NC_005262.1 + 21744 0.69 0.593792
Target:  5'- ---gCUCaCGGAAgAUCGCGCaGCGGCa -3'
miRNA:   3'- guagGAG-GUCUUgUAGCGCG-CGCUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.