miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24102 5' -54.8 NC_005262.1 + 11933 0.66 0.745037
Target:  5'- cCAUCgUCgGGAACAUgGCGCacGCG-CUg -3'
miRNA:   3'- -GUAGgAGgUCUUGUAgCGCG--CGCuGA- -5'
24102 5' -54.8 NC_005262.1 + 49489 0.68 0.64847
Target:  5'- gCAUUCUCCGGcgguGCG-CGCaGCGCGAUc -3'
miRNA:   3'- -GUAGGAGGUCu---UGUaGCG-CGCGCUGa -5'
24102 5' -54.8 NC_005262.1 + 59377 0.68 0.670305
Target:  5'- cCGagCUCCAGGcgcucgcgcaGCAg-GCGCGCGACa -3'
miRNA:   3'- -GUagGAGGUCU----------UGUagCGCGCGCUGa -5'
24102 5' -54.8 NC_005262.1 + 57754 0.67 0.691998
Target:  5'- ---gCUCgAGGGCAUUGCGCGCaauGGCg -3'
miRNA:   3'- guagGAGgUCUUGUAGCGCGCG---CUGa -5'
24102 5' -54.8 NC_005262.1 + 59998 0.67 0.691998
Target:  5'- gAUCCUCgAGAugAUgCGCGgCGUGAa- -3'
miRNA:   3'- gUAGGAGgUCUugUA-GCGC-GCGCUga -5'
24102 5' -54.8 NC_005262.1 + 32903 0.67 0.691998
Target:  5'- --gCCaagCCGGcGGCGUCGCacGCGCGACg -3'
miRNA:   3'- guaGGa--GGUC-UUGUAGCG--CGCGCUGa -5'
24102 5' -54.8 NC_005262.1 + 46983 0.67 0.713463
Target:  5'- --gCCUgUGGGcgaagGCAUgGCGCGCGACg -3'
miRNA:   3'- guaGGAgGUCU-----UGUAgCGCGCGCUGa -5'
24102 5' -54.8 NC_005262.1 + 20820 0.67 0.724082
Target:  5'- aAUCgaCagGGAACAUCGCgggGCGCGGCa -3'
miRNA:   3'- gUAGgaGg-UCUUGUAGCG---CGCGCUGa -5'
24102 5' -54.8 NC_005262.1 + 28566 0.67 0.73461
Target:  5'- --gCUUCC---GCcgCGCGCGCGACg -3'
miRNA:   3'- guaGGAGGucuUGuaGCGCGCGCUGa -5'
24102 5' -54.8 NC_005262.1 + 45069 0.68 0.626575
Target:  5'- ---aUUCCAGGGCAUcaCGCGCGCG-Ca -3'
miRNA:   3'- guagGAGGUCUUGUA--GCGCGCGCuGa -5'
24102 5' -54.8 NC_005262.1 + 44144 0.68 0.626575
Target:  5'- -uUCCggCCGG-ACG-CGCGCGCGAUc -3'
miRNA:   3'- guAGGa-GGUCuUGUaGCGCGCGCUGa -5'
24102 5' -54.8 NC_005262.1 + 12722 0.69 0.604699
Target:  5'- gCGUCCcgCCGGAGCAcCGCGUcaucggucaGUGGCUg -3'
miRNA:   3'- -GUAGGa-GGUCUUGUaGCGCG---------CGCUGA- -5'
24102 5' -54.8 NC_005262.1 + 60066 0.75 0.279241
Target:  5'- uCAUCCUgCGcAACGcCGCGCGCGACg -3'
miRNA:   3'- -GUAGGAgGUcUUGUaGCGCGCGCUGa -5'
24102 5' -54.8 NC_005262.1 + 11336 0.75 0.293574
Target:  5'- -cUCCUCCGcaaGACGccgcUCGCGCGCGGCa -3'
miRNA:   3'- guAGGAGGUc--UUGU----AGCGCGCGCUGa -5'
24102 5' -54.8 NC_005262.1 + 31772 0.75 0.300952
Target:  5'- aCAUCCgCC---GCAUCGCGCGCGAUc -3'
miRNA:   3'- -GUAGGaGGucuUGUAGCGCGCGCUGa -5'
24102 5' -54.8 NC_005262.1 + 51311 0.72 0.428531
Target:  5'- -cUCgaCCAGAugggcGCAUcCGCGCGCGGCa -3'
miRNA:   3'- guAGgaGGUCU-----UGUA-GCGCGCGCUGa -5'
24102 5' -54.8 NC_005262.1 + 17474 0.7 0.561296
Target:  5'- cCGagUUCCAGGACGaagcgcgcgcCGCGCGCGACg -3'
miRNA:   3'- -GUagGAGGUCUUGUa---------GCGCGCGCUGa -5'
24102 5' -54.8 NC_005262.1 + 25530 0.69 0.582917
Target:  5'- gCAUCCgcgUCGcGACGUcCGUGCGCGGCg -3'
miRNA:   3'- -GUAGGa--GGUcUUGUA-GCGCGCGCUGa -5'
24102 5' -54.8 NC_005262.1 + 21744 0.69 0.593792
Target:  5'- ---gCUCaCGGAAgAUCGCGCaGCGGCa -3'
miRNA:   3'- guagGAG-GUCUUgUAGCGCG-CGCUGa -5'
24102 5' -54.8 NC_005262.1 + 53442 0.69 0.604699
Target:  5'- -uUCCUCCAGAAg--CGCGgCGcCGGCg -3'
miRNA:   3'- guAGGAGGUCUUguaGCGC-GC-GCUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.