Results 21 - 40 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24102 | 5' | -54.8 | NC_005262.1 | + | 51311 | 0.72 | 0.428531 |
Target: 5'- -cUCgaCCAGAugggcGCAUcCGCGCGCGGCa -3' miRNA: 3'- guAGgaGGUCU-----UGUA-GCGCGCGCUGa -5' |
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24102 | 5' | -54.8 | NC_005262.1 | + | 17474 | 0.7 | 0.561296 |
Target: 5'- cCGagUUCCAGGACGaagcgcgcgcCGCGCGCGACg -3' miRNA: 3'- -GUagGAGGUCUUGUa---------GCGCGCGCUGa -5' |
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24102 | 5' | -54.8 | NC_005262.1 | + | 25530 | 0.69 | 0.582917 |
Target: 5'- gCAUCCgcgUCGcGACGUcCGUGCGCGGCg -3' miRNA: 3'- -GUAGGa--GGUcUUGUA-GCGCGCGCUGa -5' |
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24102 | 5' | -54.8 | NC_005262.1 | + | 21744 | 0.69 | 0.593792 |
Target: 5'- ---gCUCaCGGAAgAUCGCGCaGCGGCa -3' miRNA: 3'- guagGAG-GUCUUgUAGCGCG-CGCUGa -5' |
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24102 | 5' | -54.8 | NC_005262.1 | + | 59377 | 0.68 | 0.670305 |
Target: 5'- cCGagCUCCAGGcgcucgcgcaGCAg-GCGCGCGACa -3' miRNA: 3'- -GUagGAGGUCU----------UGUagCGCGCGCUGa -5' |
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24102 | 5' | -54.8 | NC_005262.1 | + | 49489 | 0.68 | 0.64847 |
Target: 5'- gCAUUCUCCGGcgguGCG-CGCaGCGCGAUc -3' miRNA: 3'- -GUAGGAGGUCu---UGUaGCG-CGCGCUGa -5' |
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24102 | 5' | -54.8 | NC_005262.1 | + | 45069 | 0.68 | 0.626575 |
Target: 5'- ---aUUCCAGGGCAUcaCGCGCGCG-Ca -3' miRNA: 3'- guagGAGGUCUUGUA--GCGCGCGCuGa -5' |
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24102 | 5' | -54.8 | NC_005262.1 | + | 44144 | 0.68 | 0.626575 |
Target: 5'- -uUCCggCCGG-ACG-CGCGCGCGAUc -3' miRNA: 3'- guAGGa-GGUCuUGUaGCGCGCGCUGa -5' |
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24102 | 5' | -54.8 | NC_005262.1 | + | 12722 | 0.69 | 0.604699 |
Target: 5'- gCGUCCcgCCGGAGCAcCGCGUcaucggucaGUGGCUg -3' miRNA: 3'- -GUAGGa-GGUCUUGUaGCGCG---------CGCUGA- -5' |
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24102 | 5' | -54.8 | NC_005262.1 | + | 53442 | 0.69 | 0.604699 |
Target: 5'- -uUCCUCCAGAAg--CGCGgCGcCGGCg -3' miRNA: 3'- guAGGAGGUCUUguaGCGC-GC-GCUGa -5' |
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24102 | 5' | -54.8 | NC_005262.1 | + | 51760 | 0.67 | 0.702765 |
Target: 5'- gGUCUgccaugCCGGGGa--CGCGCGCGACc -3' miRNA: 3'- gUAGGa-----GGUCUUguaGCGCGCGCUGa -5' |
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24102 | 5' | -54.8 | NC_005262.1 | + | 26434 | 0.67 | 0.710261 |
Target: 5'- uCGUCCUuCCAGAaugaccagaagugcACGUCGaaGCGCGAa- -3' miRNA: 3'- -GUAGGA-GGUCU--------------UGUAGCg-CGCGCUga -5' |
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24102 | 5' | -54.8 | NC_005262.1 | + | 46735 | 0.67 | 0.73461 |
Target: 5'- --gCCUaUCGGcGCcgUGCGCGCGACg -3' miRNA: 3'- guaGGA-GGUCuUGuaGCGCGCGCUGa -5' |
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24102 | 5' | -54.8 | NC_005262.1 | + | 32013 | 0.66 | 0.745037 |
Target: 5'- aGUCa-CCGaGACgAUCGCGCGCGAUg -3' miRNA: 3'- gUAGgaGGUcUUG-UAGCGCGCGCUGa -5' |
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24102 | 5' | -54.8 | NC_005262.1 | + | 33869 | 0.66 | 0.75535 |
Target: 5'- uCGUCCUUCAGGcUAUCGCcgaGCGUGGu- -3' miRNA: 3'- -GUAGGAGGUCUuGUAGCG---CGCGCUga -5' |
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24102 | 5' | -54.8 | NC_005262.1 | + | 8204 | 0.66 | 0.765539 |
Target: 5'- --aCCUUCAuGAACAgguccaUCGCGCGCuGCg -3' miRNA: 3'- guaGGAGGU-CUUGU------AGCGCGCGcUGa -5' |
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24102 | 5' | -54.8 | NC_005262.1 | + | 15070 | 0.66 | 0.775591 |
Target: 5'- aCAUCCgacacguugucCCAGAACGaCGCgucuuucugcgGCGCGGCg -3' miRNA: 3'- -GUAGGa----------GGUCUUGUaGCG-----------CGCGCUGa -5' |
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24102 | 5' | -54.8 | NC_005262.1 | + | 17070 | 0.66 | 0.776589 |
Target: 5'- gAUCCggucgugCCGGAuuGCGccggcuuguccacugCGCGCGCGGCg -3' miRNA: 3'- gUAGGa------GGUCU--UGUa--------------GCGCGCGCUGa -5' |
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24102 | 5' | -54.8 | NC_005262.1 | + | 9388 | 0.66 | 0.785498 |
Target: 5'- --gCCUCCGcGAGC-UUGCGCaCGACg -3' miRNA: 3'- guaGGAGGU-CUUGuAGCGCGcGCUGa -5' |
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24102 | 5' | -54.8 | NC_005262.1 | + | 3718 | 0.75 | 0.272286 |
Target: 5'- --cCCgUCAGcGCGUCGCGCGCGGCg -3' miRNA: 3'- guaGGaGGUCuUGUAGCGCGCGCUGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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