miRNA display CGI


Results 21 - 40 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24103 3' -57.3 NC_005262.1 + 36130 0.7 0.365077
Target:  5'- uACGGCGAGGCGagcaccgccagCGCGAucgaccagcucgAGCAGAUc -3'
miRNA:   3'- uUGCUGCUCCGCga---------GCGCU------------UCGUCUA- -5'
24103 3' -57.3 NC_005262.1 + 36463 0.67 0.520721
Target:  5'- -cUGGCGcauGGGCGCgCGCGAGGCuGGc -3'
miRNA:   3'- uuGCUGC---UCCGCGaGCGCUUCGuCUa -5'
24103 3' -57.3 NC_005262.1 + 40512 0.69 0.411534
Target:  5'- gAACGACGGGGCGggCGUGAAGaagcGAc -3'
miRNA:   3'- -UUGCUGCUCCGCgaGCGCUUCgu--CUa -5'
24103 3' -57.3 NC_005262.1 + 45151 0.75 0.170734
Target:  5'- cGCGACaAGGCGCUCGCGcugcguGCGGAc -3'
miRNA:   3'- uUGCUGcUCCGCGAGCGCuu----CGUCUa -5'
24103 3' -57.3 NC_005262.1 + 45388 0.67 0.520721
Target:  5'- cGCGcucauUGAGGCGCUCG-GAAGCcGGUg -3'
miRNA:   3'- uUGCu----GCUCCGCGAGCgCUUCGuCUA- -5'
24103 3' -57.3 NC_005262.1 + 45627 0.67 0.510279
Target:  5'- ----uUGGGGCGCUCGCGcgaucAGGCGGGc -3'
miRNA:   3'- uugcuGCUCCGCGAGCGC-----UUCGUCUa -5'
24103 3' -57.3 NC_005262.1 + 46798 0.69 0.393234
Target:  5'- cACGACGAGcgcGCGCUCggccgGCGGcAGCAGGg -3'
miRNA:   3'- uUGCUGCUC---CGCGAG-----CGCU-UCGUCUa -5'
24103 3' -57.3 NC_005262.1 + 46986 0.67 0.541848
Target:  5'- uGugGGCGaAGGCaugGCgCGCGAcGCAGAUg -3'
miRNA:   3'- -UugCUGC-UCCG---CGaGCGCUuCGUCUA- -5'
24103 3' -57.3 NC_005262.1 + 50405 0.68 0.449665
Target:  5'- cGCGGCGAucaGCGC-CGCGGAGCGcGAg -3'
miRNA:   3'- uUGCUGCUc--CGCGaGCGCUUCGU-CUa -5'
24103 3' -57.3 NC_005262.1 + 53904 0.69 0.439948
Target:  5'- cGugGACGGGucuGCGCgacgCGCuGAAGCAGGc -3'
miRNA:   3'- -UugCUGCUC---CGCGa---GCG-CUUCGUCUa -5'
24103 3' -57.3 NC_005262.1 + 54469 0.72 0.280676
Target:  5'- cAACGuCGAGGCGCugcUCGCGguGCAGc- -3'
miRNA:   3'- -UUGCuGCUCCGCG---AGCGCuuCGUCua -5'
24103 3' -57.3 NC_005262.1 + 57284 0.67 0.531247
Target:  5'- uGACGGCGAggucGGCGCgcugaUCGUcGAGCGGGUu -3'
miRNA:   3'- -UUGCUGCU----CCGCG-----AGCGcUUCGUCUA- -5'
24103 3' -57.3 NC_005262.1 + 57474 0.66 0.595748
Target:  5'- aAGCGGCG-GGCGC-CGacgaGAGGCGGc- -3'
miRNA:   3'- -UUGCUGCuCCGCGaGCg---CUUCGUCua -5'
24103 3' -57.3 NC_005262.1 + 57498 0.67 0.520721
Target:  5'- -cCGACGAGGCGCcgaaguucagcgUCGCGccGGGCAu-- -3'
miRNA:   3'- uuGCUGCUCCGCG------------AGCGC--UUCGUcua -5'
24103 3' -57.3 NC_005262.1 + 58336 0.67 0.520721
Target:  5'- gAACGGCGAGGUucGC-CGCGAGGUc--- -3'
miRNA:   3'- -UUGCUGCUCCG--CGaGCGCUUCGucua -5'
24103 3' -57.3 NC_005262.1 + 59372 0.73 0.228701
Target:  5'- cAACGcCGAgcuccaGGCGCUCGCGcAGCAGGc -3'
miRNA:   3'- -UUGCuGCU------CCGCGAGCGCuUCGUCUa -5'
24103 3' -57.3 NC_005262.1 + 59496 0.73 0.247171
Target:  5'- cGACGAUGAGGgGCgCGUGAuugaGGCGGGUg -3'
miRNA:   3'- -UUGCUGCUCCgCGaGCGCU----UCGUCUA- -5'
24103 3' -57.3 NC_005262.1 + 59941 1.03 0.001753
Target:  5'- cAACGACGAGGCGCUCGCGAAGCAGAUu -3'
miRNA:   3'- -UUGCUGCUCCGCGAGCGCUUCGUCUA- -5'
24103 3' -57.3 NC_005262.1 + 60977 0.68 0.469447
Target:  5'- aAACGAgguCGAGGCGCagGUGGAGCGc-- -3'
miRNA:   3'- -UUGCU---GCUCCGCGagCGCUUCGUcua -5'
24103 3' -57.3 NC_005262.1 + 61130 0.67 0.510279
Target:  5'- gGACGguguACGAcGCGCUgGCGcAGCAGAUc -3'
miRNA:   3'- -UUGC----UGCUcCGCGAgCGCuUCGUCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.