miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24103 3' -57.3 NC_005262.1 + 1743 0.66 0.595748
Target:  5'- uGCGA-GGGGCGCgggauucgagcUCGCGAucgauGCAGGUc -3'
miRNA:   3'- uUGCUgCUCCGCG-----------AGCGCUu----CGUCUA- -5'
24103 3' -57.3 NC_005262.1 + 2041 0.68 0.499925
Target:  5'- -uCGACGGGGCGCguaGCG-AGCAu-- -3'
miRNA:   3'- uuGCUGCUCCGCGag-CGCuUCGUcua -5'
24103 3' -57.3 NC_005262.1 + 7764 0.66 0.606653
Target:  5'- uGCGGCG-GGCcCUUGCGGuuGCGGAUc -3'
miRNA:   3'- uUGCUGCuCCGcGAGCGCUu-CGUCUA- -5'
24103 3' -57.3 NC_005262.1 + 8269 0.73 0.246536
Target:  5'- cAGCGGcCGAGGaagcugcccgcguCGCUCGCGAGGCGGc- -3'
miRNA:   3'- -UUGCU-GCUCC-------------GCGAGCGCUUCGUCua -5'
24103 3' -57.3 NC_005262.1 + 12593 0.66 0.595748
Target:  5'- -cCGGCGAGGCG-UCGCGGaugAGCGc-- -3'
miRNA:   3'- uuGCUGCUCCGCgAGCGCU---UCGUcua -5'
24103 3' -57.3 NC_005262.1 + 15719 0.67 0.541848
Target:  5'- -uCGGCGccGGGCgGCUCGuCGcGGCAGGUg -3'
miRNA:   3'- uuGCUGC--UCCG-CGAGC-GCuUCGUCUA- -5'
24103 3' -57.3 NC_005262.1 + 15908 0.75 0.190119
Target:  5'- cGCGACGuGGCGC-CGCGAugcgccGCAGAg -3'
miRNA:   3'- uUGCUGCuCCGCGaGCGCUu-----CGUCUa -5'
24103 3' -57.3 NC_005262.1 + 16500 0.66 0.574039
Target:  5'- --gGGCGAGGCGCUgggcgcugCGCuGggGCuGAc -3'
miRNA:   3'- uugCUGCUCCGCGA--------GCG-CuuCGuCUa -5'
24103 3' -57.3 NC_005262.1 + 17257 0.67 0.528081
Target:  5'- gAGCGGCGGccGGCGC-CGCGcugggcugcugcgcGGGCAGGg -3'
miRNA:   3'- -UUGCUGCU--CCGCGaGCGC--------------UUCGUCUa -5'
24103 3' -57.3 NC_005262.1 + 17525 0.68 0.468448
Target:  5'- uGACGACGAugcacgggcacgcGGuCGCgCGCGAGGCGGc- -3'
miRNA:   3'- -UUGCUGCU-------------CC-GCGaGCGCUUCGUCua -5'
24103 3' -57.3 NC_005262.1 + 20582 0.67 0.552518
Target:  5'- -cCGGCGAGcaGCGCgcggCGCGccGCAGGg -3'
miRNA:   3'- uuGCUGCUC--CGCGa---GCGCuuCGUCUa -5'
24103 3' -57.3 NC_005262.1 + 22837 0.66 0.606653
Target:  5'- cGCGGCGaAGGCGCUCGuCGGcuaucucgccAGCGu-- -3'
miRNA:   3'- uUGCUGC-UCCGCGAGC-GCU----------UCGUcua -5'
24103 3' -57.3 NC_005262.1 + 24395 0.66 0.606653
Target:  5'- -cCGGCGGcGCGCacgucCGCGAAGguGAUg -3'
miRNA:   3'- uuGCUGCUcCGCGa----GCGCUUCguCUA- -5'
24103 3' -57.3 NC_005262.1 + 25442 0.73 0.240881
Target:  5'- uACGAcaaccugccCGAGGCGCUgCGCGAGGC-GAUg -3'
miRNA:   3'- uUGCU---------GCUCCGCGA-GCGCUUCGuCUA- -5'
24103 3' -57.3 NC_005262.1 + 27562 0.66 0.584874
Target:  5'- -cCGGCGAGGaCGC-CGCGcAGCGcGAg -3'
miRNA:   3'- uuGCUGCUCC-GCGaGCGCuUCGU-CUa -5'
24103 3' -57.3 NC_005262.1 + 29454 0.68 0.479504
Target:  5'- uGCGGCaGAGGCGCaggUCGCcGAGGCGa-- -3'
miRNA:   3'- uUGCUG-CUCCGCG---AGCG-CUUCGUcua -5'
24103 3' -57.3 NC_005262.1 + 32289 0.69 0.402318
Target:  5'- uACGGCGcGGGCGCgaaCGuCGAGGCAGc- -3'
miRNA:   3'- uUGCUGC-UCCGCGa--GC-GCUUCGUCua -5'
24103 3' -57.3 NC_005262.1 + 33528 0.77 0.133458
Target:  5'- gGACGACGAGGCGaUCGCGAccaAGaCGGAa -3'
miRNA:   3'- -UUGCUGCUCCGCgAGCGCU---UC-GUCUa -5'
24103 3' -57.3 NC_005262.1 + 34877 0.69 0.411534
Target:  5'- -uCGugGGGcGCGCUCGCG-AGCAu-- -3'
miRNA:   3'- uuGCugCUC-CGCGAGCGCuUCGUcua -5'
24103 3' -57.3 NC_005262.1 + 35836 0.66 0.584874
Target:  5'- gAGCGGCGucGGCGC-CGCGAccgccCAGAUg -3'
miRNA:   3'- -UUGCUGCu-CCGCGaGCGCUuc---GUCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.