Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24103 | 3' | -57.3 | NC_005262.1 | + | 20582 | 0.67 | 0.552518 |
Target: 5'- -cCGGCGAGcaGCGCgcggCGCGccGCAGGg -3' miRNA: 3'- uuGCUGCUC--CGCGa---GCGCuuCGUCUa -5' |
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24103 | 3' | -57.3 | NC_005262.1 | + | 50405 | 0.68 | 0.449665 |
Target: 5'- cGCGGCGAucaGCGC-CGCGGAGCGcGAg -3' miRNA: 3'- uUGCUGCUc--CGCGaGCGCUUCGU-CUa -5' |
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24103 | 3' | -57.3 | NC_005262.1 | + | 17525 | 0.68 | 0.468448 |
Target: 5'- uGACGACGAugcacgggcacgcGGuCGCgCGCGAGGCGGc- -3' miRNA: 3'- -UUGCUGCU-------------CC-GCGaGCGCUUCGUCua -5' |
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24103 | 3' | -57.3 | NC_005262.1 | + | 29454 | 0.68 | 0.479504 |
Target: 5'- uGCGGCaGAGGCGCaggUCGCcGAGGCGa-- -3' miRNA: 3'- uUGCUG-CUCCGCG---AGCG-CUUCGUcua -5' |
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24103 | 3' | -57.3 | NC_005262.1 | + | 2041 | 0.68 | 0.499925 |
Target: 5'- -uCGACGGGGCGCguaGCG-AGCAu-- -3' miRNA: 3'- uuGCUGCUCCGCGag-CGCuUCGUcua -5' |
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24103 | 3' | -57.3 | NC_005262.1 | + | 61130 | 0.67 | 0.510279 |
Target: 5'- gGACGguguACGAcGCGCUgGCGcAGCAGAUc -3' miRNA: 3'- -UUGC----UGCUcCGCGAgCGCuUCGUCUA- -5' |
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24103 | 3' | -57.3 | NC_005262.1 | + | 36463 | 0.67 | 0.520721 |
Target: 5'- -cUGGCGcauGGGCGCgCGCGAGGCuGGc -3' miRNA: 3'- uuGCUGC---UCCGCGaGCGCUUCGuCUa -5' |
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24103 | 3' | -57.3 | NC_005262.1 | + | 57498 | 0.67 | 0.520721 |
Target: 5'- -cCGACGAGGCGCcgaaguucagcgUCGCGccGGGCAu-- -3' miRNA: 3'- uuGCUGCUCCGCG------------AGCGC--UUCGUcua -5' |
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24103 | 3' | -57.3 | NC_005262.1 | + | 46986 | 0.67 | 0.541848 |
Target: 5'- uGugGGCGaAGGCaugGCgCGCGAcGCAGAUg -3' miRNA: 3'- -UugCUGC-UCCG---CGaGCGCUuCGUCUA- -5' |
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24103 | 3' | -57.3 | NC_005262.1 | + | 53904 | 0.69 | 0.439948 |
Target: 5'- cGugGACGGGucuGCGCgacgCGCuGAAGCAGGc -3' miRNA: 3'- -UugCUGCUC---CGCGa---GCG-CUUCGUCUa -5' |
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24103 | 3' | -57.3 | NC_005262.1 | + | 34877 | 0.69 | 0.411534 |
Target: 5'- -uCGugGGGcGCGCUCGCG-AGCAu-- -3' miRNA: 3'- uuGCugCUC-CGCGAGCGCuUCGUcua -5' |
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24103 | 3' | -57.3 | NC_005262.1 | + | 32289 | 0.69 | 0.402318 |
Target: 5'- uACGGCGcGGGCGCgaaCGuCGAGGCAGc- -3' miRNA: 3'- uUGCUGC-UCCGCGa--GC-GCUUCGUCua -5' |
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24103 | 3' | -57.3 | NC_005262.1 | + | 33528 | 0.77 | 0.133458 |
Target: 5'- gGACGACGAGGCGaUCGCGAccaAGaCGGAa -3' miRNA: 3'- -UUGCUGCUCCGCgAGCGCU---UC-GUCUa -5' |
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24103 | 3' | -57.3 | NC_005262.1 | + | 45151 | 0.75 | 0.170734 |
Target: 5'- cGCGACaAGGCGCUCGCGcugcguGCGGAc -3' miRNA: 3'- uUGCUGcUCCGCGAGCGCuu----CGUCUa -5' |
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24103 | 3' | -57.3 | NC_005262.1 | + | 15908 | 0.75 | 0.190119 |
Target: 5'- cGCGACGuGGCGC-CGCGAugcgccGCAGAg -3' miRNA: 3'- uUGCUGCuCCGCGaGCGCUu-----CGUCUa -5' |
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24103 | 3' | -57.3 | NC_005262.1 | + | 59372 | 0.73 | 0.228701 |
Target: 5'- cAACGcCGAgcuccaGGCGCUCGCGcAGCAGGc -3' miRNA: 3'- -UUGCuGCU------CCGCGAGCGCuUCGUCUa -5' |
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24103 | 3' | -57.3 | NC_005262.1 | + | 25442 | 0.73 | 0.240881 |
Target: 5'- uACGAcaaccugccCGAGGCGCUgCGCGAGGC-GAUg -3' miRNA: 3'- uUGCU---------GCUCCGCGA-GCGCUUCGuCUA- -5' |
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24103 | 3' | -57.3 | NC_005262.1 | + | 8269 | 0.73 | 0.246536 |
Target: 5'- cAGCGGcCGAGGaagcugcccgcguCGCUCGCGAGGCGGc- -3' miRNA: 3'- -UUGCU-GCUCC-------------GCGAGCGCUUCGUCua -5' |
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24103 | 3' | -57.3 | NC_005262.1 | + | 54469 | 0.72 | 0.280676 |
Target: 5'- cAACGuCGAGGCGCugcUCGCGguGCAGc- -3' miRNA: 3'- -UUGCuGCUCCGCG---AGCGCuuCGUCua -5' |
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24103 | 3' | -57.3 | NC_005262.1 | + | 36130 | 0.7 | 0.365077 |
Target: 5'- uACGGCGAGGCGagcaccgccagCGCGAucgaccagcucgAGCAGAUc -3' miRNA: 3'- uUGCUGCUCCGCga---------GCGCU------------UCGUCUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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