Results 21 - 40 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24103 | 3' | -57.3 | NC_005262.1 | + | 25442 | 0.73 | 0.240881 |
Target: 5'- uACGAcaaccugccCGAGGCGCUgCGCGAGGC-GAUg -3' miRNA: 3'- uUGCU---------GCUCCGCGA-GCGCUUCGuCUA- -5' |
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24103 | 3' | -57.3 | NC_005262.1 | + | 8269 | 0.73 | 0.246536 |
Target: 5'- cAGCGGcCGAGGaagcugcccgcguCGCUCGCGAGGCGGc- -3' miRNA: 3'- -UUGCU-GCUCC-------------GCGAGCGCUUCGUCua -5' |
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24103 | 3' | -57.3 | NC_005262.1 | + | 54469 | 0.72 | 0.280676 |
Target: 5'- cAACGuCGAGGCGCugcUCGCGguGCAGc- -3' miRNA: 3'- -UUGCuGCUCCGCG---AGCGCuuCGUCua -5' |
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24103 | 3' | -57.3 | NC_005262.1 | + | 50405 | 0.68 | 0.449665 |
Target: 5'- cGCGGCGAucaGCGC-CGCGGAGCGcGAg -3' miRNA: 3'- uUGCUGCUc--CGCGaGCGCUUCGU-CUa -5' |
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24103 | 3' | -57.3 | NC_005262.1 | + | 53904 | 0.69 | 0.439948 |
Target: 5'- cGugGACGGGucuGCGCgacgCGCuGAAGCAGGc -3' miRNA: 3'- -UugCUGCUC---CGCGa---GCG-CUUCGUCUa -5' |
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24103 | 3' | -57.3 | NC_005262.1 | + | 34877 | 0.69 | 0.411534 |
Target: 5'- -uCGugGGGcGCGCUCGCG-AGCAu-- -3' miRNA: 3'- uuGCugCUC-CGCGAGCGCuUCGUcua -5' |
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24103 | 3' | -57.3 | NC_005262.1 | + | 32289 | 0.69 | 0.402318 |
Target: 5'- uACGGCGcGGGCGCgaaCGuCGAGGCAGc- -3' miRNA: 3'- uUGCUGC-UCCGCGa--GC-GCUUCGUCua -5' |
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24103 | 3' | -57.3 | NC_005262.1 | + | 36130 | 0.7 | 0.365077 |
Target: 5'- uACGGCGAGGCGagcaccgccagCGCGAucgaccagcucgAGCAGAUc -3' miRNA: 3'- uUGCUGCUCCGCga---------GCGCU------------UCGUCUA- -5' |
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24103 | 3' | -57.3 | NC_005262.1 | + | 46798 | 0.69 | 0.393234 |
Target: 5'- cACGACGAGcgcGCGCUCggccgGCGGcAGCAGGg -3' miRNA: 3'- uUGCUGCUC---CGCGAG-----CGCU-UCGUCUa -5' |
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24103 | 3' | -57.3 | NC_005262.1 | + | 40512 | 0.69 | 0.411534 |
Target: 5'- gAACGACGGGGCGggCGUGAAGaagcGAc -3' miRNA: 3'- -UUGCUGCUCCGCgaGCGCUUCgu--CUa -5' |
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24103 | 3' | -57.3 | NC_005262.1 | + | 60977 | 0.68 | 0.469447 |
Target: 5'- aAACGAgguCGAGGCGCagGUGGAGCGc-- -3' miRNA: 3'- -UUGCU---GCUCCGCGagCGCUUCGUcua -5' |
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24103 | 3' | -57.3 | NC_005262.1 | + | 45627 | 0.67 | 0.510279 |
Target: 5'- ----uUGGGGCGCUCGCGcgaucAGGCGGGc -3' miRNA: 3'- uugcuGCUCCGCGAGCGC-----UUCGUCUa -5' |
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24103 | 3' | -57.3 | NC_005262.1 | + | 58336 | 0.67 | 0.520721 |
Target: 5'- gAACGGCGAGGUucGC-CGCGAGGUc--- -3' miRNA: 3'- -UUGCUGCUCCG--CGaGCGCUUCGucua -5' |
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24103 | 3' | -57.3 | NC_005262.1 | + | 45388 | 0.67 | 0.520721 |
Target: 5'- cGCGcucauUGAGGCGCUCG-GAAGCcGGUg -3' miRNA: 3'- uUGCu----GCUCCGCGAGCgCUUCGuCUA- -5' |
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24103 | 3' | -57.3 | NC_005262.1 | + | 17257 | 0.67 | 0.528081 |
Target: 5'- gAGCGGCGGccGGCGC-CGCGcugggcugcugcgcGGGCAGGg -3' miRNA: 3'- -UUGCUGCU--CCGCGaGCGC--------------UUCGUCUa -5' |
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24103 | 3' | -57.3 | NC_005262.1 | + | 57284 | 0.67 | 0.531247 |
Target: 5'- uGACGGCGAggucGGCGCgcugaUCGUcGAGCGGGUu -3' miRNA: 3'- -UUGCUGCU----CCGCG-----AGCGcUUCGUCUA- -5' |
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24103 | 3' | -57.3 | NC_005262.1 | + | 15719 | 0.67 | 0.541848 |
Target: 5'- -uCGGCGccGGGCgGCUCGuCGcGGCAGGUg -3' miRNA: 3'- uuGCUGC--UCCG-CGAGC-GCuUCGUCUA- -5' |
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24103 | 3' | -57.3 | NC_005262.1 | + | 57474 | 0.66 | 0.595748 |
Target: 5'- aAGCGGCG-GGCGC-CGacgaGAGGCGGc- -3' miRNA: 3'- -UUGCUGCuCCGCGaGCg---CUUCGUCua -5' |
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24103 | 3' | -57.3 | NC_005262.1 | + | 7764 | 0.66 | 0.606653 |
Target: 5'- uGCGGCG-GGCcCUUGCGGuuGCGGAUc -3' miRNA: 3'- uUGCUGCuCCGcGAGCGCUu-CGUCUA- -5' |
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24103 | 3' | -57.3 | NC_005262.1 | + | 59496 | 0.73 | 0.247171 |
Target: 5'- cGACGAUGAGGgGCgCGUGAuugaGGCGGGUg -3' miRNA: 3'- -UUGCUGCUCCgCGaGCGCU----UCGUCUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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