miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24103 5' -56.6 NC_005262.1 + 10230 0.68 0.547898
Target:  5'- cCGGUCA---GCGCGUGCGCgCCGAgcaCCa -3'
miRNA:   3'- -GCUAGUccgCGCGUACGUG-GGCUa--GG- -5'
24103 5' -56.6 NC_005262.1 + 10422 0.66 0.686735
Target:  5'- gCGGUCugcGGCagGCGCAUgGCG-CCGAUCa -3'
miRNA:   3'- -GCUAGu--CCG--CGCGUA-CGUgGGCUAGg -5'
24103 5' -56.6 NC_005262.1 + 10460 0.66 0.71834
Target:  5'- gCGGUCGgcgagguagcGGCGCGCGcgGuCGCUCGccuuGUCCa -3'
miRNA:   3'- -GCUAGU----------CCGCGCGUa-C-GUGGGC----UAGG- -5'
24103 5' -56.6 NC_005262.1 + 10704 0.67 0.633194
Target:  5'- aGAUCgAGGCcgcGCGCAcGCGgCCGGcgcUCCc -3'
miRNA:   3'- gCUAG-UCCG---CGCGUaCGUgGGCU---AGG- -5'
24103 5' -56.6 NC_005262.1 + 10784 0.68 0.568991
Target:  5'- ---cCGGGCGCGCGguacUGCugCgCGAgcugCCg -3'
miRNA:   3'- gcuaGUCCGCGCGU----ACGugG-GCUa---GG- -5'
24103 5' -56.6 NC_005262.1 + 11838 0.69 0.527057
Target:  5'- uCGAgcgCAGGCGCGCGcgagcgGCcuccACCUuGUCCg -3'
miRNA:   3'- -GCUa--GUCCGCGCGUa-----CG----UGGGcUAGG- -5'
24103 5' -56.6 NC_005262.1 + 12472 0.71 0.428242
Target:  5'- uCGAUCuugccGCGCGCGgaUGCGCCC-AUCUg -3'
miRNA:   3'- -GCUAGuc---CGCGCGU--ACGUGGGcUAGG- -5'
24103 5' -56.6 NC_005262.1 + 12559 0.73 0.325433
Target:  5'- cCGuagCcGGCGCGCAUGaggaGCCCGGUgCg -3'
miRNA:   3'- -GCua-GuCCGCGCGUACg---UGGGCUAgG- -5'
24103 5' -56.6 NC_005262.1 + 12657 0.73 0.325433
Target:  5'- gCGcgCGcGGCGCGCGgcgaacccUGCGCCCGuUCUg -3'
miRNA:   3'- -GCuaGU-CCGCGCGU--------ACGUGGGCuAGG- -5'
24103 5' -56.6 NC_005262.1 + 13533 0.67 0.622444
Target:  5'- gGcgCGGGCGCGCccucguugcgGCGgUCGAUCUc -3'
miRNA:   3'- gCuaGUCCGCGCGua--------CGUgGGCUAGG- -5'
24103 5' -56.6 NC_005262.1 + 14520 0.69 0.520862
Target:  5'- gCGAUCGGcaacagcauggcaguGcCGUGCAUGCGCUgGAUCg -3'
miRNA:   3'- -GCUAGUC---------------C-GCGCGUACGUGGgCUAGg -5'
24103 5' -56.6 NC_005262.1 + 15993 0.68 0.546849
Target:  5'- aGAUC-GGCGUGCAgcgcgGCACCgacgacgagcaggCGAUCg -3'
miRNA:   3'- gCUAGuCCGCGCGUa----CGUGG-------------GCUAGg -5'
24103 5' -56.6 NC_005262.1 + 16580 0.66 0.665398
Target:  5'- cCGAgCAGGCGCGUGUGCuGgUCGAggCg -3'
miRNA:   3'- -GCUaGUCCGCGCGUACG-UgGGCUagG- -5'
24103 5' -56.6 NC_005262.1 + 16867 0.68 0.579615
Target:  5'- uGAUgCAGGCGCcCGgccGCGCgCCGggCCg -3'
miRNA:   3'- gCUA-GUCCGCGcGUa--CGUG-GGCuaGG- -5'
24103 5' -56.6 NC_005262.1 + 17886 0.75 0.230104
Target:  5'- uGAUC-GGCGCGC--GCAUCCGGUCg -3'
miRNA:   3'- gCUAGuCCGCGCGuaCGUGGGCUAGg -5'
24103 5' -56.6 NC_005262.1 + 18091 0.67 0.655753
Target:  5'- uCGAUCAcggccGGCugccggcccucgauGCGCAcgaagugcggcaccaUGCGCUCGAUCUg -3'
miRNA:   3'- -GCUAGU-----CCG--------------CGCGU---------------ACGUGGGCUAGG- -5'
24103 5' -56.6 NC_005262.1 + 18155 0.69 0.50652
Target:  5'- ---cCGGGaGCGCGUGCccGCCUGAUCg -3'
miRNA:   3'- gcuaGUCCgCGCGUACG--UGGGCUAGg -5'
24103 5' -56.6 NC_005262.1 + 18671 0.7 0.476381
Target:  5'- aCGuUCuGGCGCGCGguguucgcgGCACCCG--CCg -3'
miRNA:   3'- -GCuAGuCCGCGCGUa--------CGUGGGCuaGG- -5'
24103 5' -56.6 NC_005262.1 + 19122 0.66 0.665398
Target:  5'- gGAUCGGGCGCGgGcGCGuCgCCGGcgUCUu -3'
miRNA:   3'- gCUAGUCCGCGCgUaCGU-G-GGCU--AGG- -5'
24103 5' -56.6 NC_005262.1 + 19127 0.73 0.310188
Target:  5'- gCGGUCGGGCa-GCAUGUcgauaggaACCCGGUUCa -3'
miRNA:   3'- -GCUAGUCCGcgCGUACG--------UGGGCUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.