miRNA display CGI


Results 1 - 20 of 104 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24103 5' -56.6 NC_005262.1 + 481 0.66 0.686735
Target:  5'- gCGA-CGcGGCGCGCGUGUuccacgucgACgCCGAgCCa -3'
miRNA:   3'- -GCUaGU-CCGCGCGUACG---------UG-GGCUaGG- -5'
24103 5' -56.6 NC_005262.1 + 1081 0.69 0.537443
Target:  5'- cCGAUCAGG-GUGCGUGCgcgauuACCC-AUCg -3'
miRNA:   3'- -GCUAGUCCgCGCGUACG------UGGGcUAGg -5'
24103 5' -56.6 NC_005262.1 + 1216 0.67 0.622444
Target:  5'- uCGAUCGauuCGuCGCAcGCACCCG-UCCg -3'
miRNA:   3'- -GCUAGUcc-GC-GCGUaCGUGGGCuAGG- -5'
24103 5' -56.6 NC_005262.1 + 1835 0.66 0.676086
Target:  5'- uCGccgCAGGCuGCGCAUGCgguugccuGCuuGGUCg -3'
miRNA:   3'- -GCua-GUCCG-CGCGUACG--------UGggCUAGg -5'
24103 5' -56.6 NC_005262.1 + 2186 0.72 0.333263
Target:  5'- --uUCAGGCGCGCGcGCuucuGCUCGGUCg -3'
miRNA:   3'- gcuAGUCCGCGCGUaCG----UGGGCUAGg -5'
24103 5' -56.6 NC_005262.1 + 2810 0.66 0.665398
Target:  5'- -cGUCAGGCGCucCAccUGCGCCuCGA-CCu -3'
miRNA:   3'- gcUAGUCCGCGc-GU--ACGUGG-GCUaGG- -5'
24103 5' -56.6 NC_005262.1 + 3024 0.68 0.600979
Target:  5'- uGAUCcGGCGgaagccguugaGCcgGCGCCCGGUUa -3'
miRNA:   3'- gCUAGuCCGCg----------CGuaCGUGGGCUAGg -5'
24103 5' -56.6 NC_005262.1 + 3632 0.7 0.476381
Target:  5'- aGGUCcaucggcuGGGCGCGCA-GCuucuCCCGGUUg -3'
miRNA:   3'- gCUAG--------UCCGCGCGUaCGu---GGGCUAGg -5'
24103 5' -56.6 NC_005262.1 + 3818 0.73 0.325433
Target:  5'- gGAUCGGGUGCaUgcGCGCCUGAUCg -3'
miRNA:   3'- gCUAGUCCGCGcGuaCGUGGGCUAGg -5'
24103 5' -56.6 NC_005262.1 + 4689 0.68 0.558416
Target:  5'- gGAUCGGGC-CGCG-GCAUCCaGUCg -3'
miRNA:   3'- gCUAGUCCGcGCGUaCGUGGGcUAGg -5'
24103 5' -56.6 NC_005262.1 + 5188 0.67 0.642867
Target:  5'- gCGGgcgCGGGCGCgGCcgGCGCgaCCGAgggcguaUCCu -3'
miRNA:   3'- -GCUa--GUCCGCG-CGuaCGUG--GGCU-------AGG- -5'
24103 5' -56.6 NC_005262.1 + 5827 0.69 0.514695
Target:  5'- aGAUgCGGGCGCGCcaauuucaagcGCGCUCGcgCCc -3'
miRNA:   3'- gCUA-GUCCGCGCGua---------CGUGGGCuaGG- -5'
24103 5' -56.6 NC_005262.1 + 6383 0.66 0.71834
Target:  5'- -aGUCAGGuCGaGCGUGCugCCG-UCg -3'
miRNA:   3'- gcUAGUCC-GCgCGUACGugGGCuAGg -5'
24103 5' -56.6 NC_005262.1 + 6464 0.67 0.65468
Target:  5'- cCGGgaacGGCGCGCccagacgGUugCCGAUCUg -3'
miRNA:   3'- -GCUagu-CCGCGCGua-----CGugGGCUAGG- -5'
24103 5' -56.6 NC_005262.1 + 6858 0.67 0.633194
Target:  5'- aCGAUCAGGC-CGUaguccucggcgAUGCcgGCCgCGAUCg -3'
miRNA:   3'- -GCUAGUCCGcGCG-----------UACG--UGG-GCUAGg -5'
24103 5' -56.6 NC_005262.1 + 8107 0.69 0.495371
Target:  5'- aGGUCGGGaaGCGCAagaGCAUcccgaagCCGAUCCg -3'
miRNA:   3'- gCUAGUCCg-CGCGUa--CGUG-------GGCUAGG- -5'
24103 5' -56.6 NC_005262.1 + 8904 0.74 0.28065
Target:  5'- aCGGUCcgcucuuGGGUGCGCGgcgaaaaGCGCCCGAUUa -3'
miRNA:   3'- -GCUAG-------UCCGCGCGUa------CGUGGGCUAGg -5'
24103 5' -56.6 NC_005262.1 + 8952 0.69 0.537443
Target:  5'- uCGcgCGGGCGaCGCAcucCACCC-AUCCg -3'
miRNA:   3'- -GCuaGUCCGC-GCGUac-GUGGGcUAGG- -5'
24103 5' -56.6 NC_005262.1 + 8956 0.7 0.437643
Target:  5'- cCGGUC-GGCGCGC-UGCgugUCGGUCCa -3'
miRNA:   3'- -GCUAGuCCGCGCGuACGug-GGCUAGG- -5'
24103 5' -56.6 NC_005262.1 + 9363 0.74 0.274473
Target:  5'- cCGGUCGGcGCGCGCG-GCGgCCUGcgCCu -3'
miRNA:   3'- -GCUAGUC-CGCGCGUaCGU-GGGCuaGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.