Results 1 - 20 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24103 | 5' | -56.6 | NC_005262.1 | + | 51959 | 0.69 | 0.50652 |
Target: 5'- cCGcUCGcGCGCGCcUGCGCUCGAaacugUCCg -3' miRNA: 3'- -GCuAGUcCGCGCGuACGUGGGCU-----AGG- -5' |
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24103 | 5' | -56.6 | NC_005262.1 | + | 33890 | 0.7 | 0.44716 |
Target: 5'- aCGAUCGuGCGUcgGCcgGCgGCCCGAUCg -3' miRNA: 3'- -GCUAGUcCGCG--CGuaCG-UGGGCUAGg -5' |
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24103 | 5' | -56.6 | NC_005262.1 | + | 53368 | 0.7 | 0.466533 |
Target: 5'- uGAUC-GGCGC-CAUGCGCCUG--CCg -3' miRNA: 3'- gCUAGuCCGCGcGUACGUGGGCuaGG- -5' |
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24103 | 5' | -56.6 | NC_005262.1 | + | 3632 | 0.7 | 0.476381 |
Target: 5'- aGGUCcaucggcuGGGCGCGCA-GCuucuCCCGGUUg -3' miRNA: 3'- gCUAG--------UCCGCGCGUaCGu---GGGCUAGg -5' |
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24103 | 5' | -56.6 | NC_005262.1 | + | 8107 | 0.69 | 0.495371 |
Target: 5'- aGGUCGGGaaGCGCAagaGCAUcccgaagCCGAUCCg -3' miRNA: 3'- gCUAGUCCg-CGCGUa--CGUG-------GGCUAGG- -5' |
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24103 | 5' | -56.6 | NC_005262.1 | + | 58649 | 0.69 | 0.496379 |
Target: 5'- gCGGcCGGGCGCGCGaGUucuacgaucaaGCCCGAgCCc -3' miRNA: 3'- -GCUaGUCCGCGCGUaCG-----------UGGGCUaGG- -5' |
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24103 | 5' | -56.6 | NC_005262.1 | + | 18155 | 0.69 | 0.50652 |
Target: 5'- ---cCGGGaGCGCGUGCccGCCUGAUCg -3' miRNA: 3'- gcuaGUCCgCGCGUACG--UGGGCUAGg -5' |
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24103 | 5' | -56.6 | NC_005262.1 | + | 26883 | 0.69 | 0.50652 |
Target: 5'- aCGAUCGagugggccGGCGCGUccGUugUCGAUCa -3' miRNA: 3'- -GCUAGU--------CCGCGCGuaCGugGGCUAGg -5' |
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24103 | 5' | -56.6 | NC_005262.1 | + | 49340 | 0.69 | 0.50652 |
Target: 5'- aCGAgCAGGCGCGCGccGCGCUCGc--- -3' miRNA: 3'- -GCUaGUCCGCGCGUa-CGUGGGCuagg -5' |
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24103 | 5' | -56.6 | NC_005262.1 | + | 46393 | 0.71 | 0.418963 |
Target: 5'- cCGAaCAGGCGCGCcucgucgggcUGgGCCCGcaagGUCCg -3' miRNA: 3'- -GCUaGUCCGCGCGu---------ACgUGGGC----UAGG- -5' |
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24103 | 5' | -56.6 | NC_005262.1 | + | 53697 | 0.71 | 0.409806 |
Target: 5'- ---cCGGGCGCGCAga-ACCCGG-CCg -3' miRNA: 3'- gcuaGUCCGCGCGUacgUGGGCUaGG- -5' |
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24103 | 5' | -56.6 | NC_005262.1 | + | 49750 | 0.71 | 0.391871 |
Target: 5'- cCGAcgCcGGCgGCGCccGCGCCCGAggcUCCg -3' miRNA: 3'- -GCUa-GuCCG-CGCGuaCGUGGGCU---AGG- -5' |
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24103 | 5' | -56.6 | NC_005262.1 | + | 37931 | 0.76 | 0.202244 |
Target: 5'- aCGAUU-GGCGCGCAUGgACCgCGAcgCCa -3' miRNA: 3'- -GCUAGuCCGCGCGUACgUGG-GCUa-GG- -5' |
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24103 | 5' | -56.6 | NC_005262.1 | + | 44674 | 0.75 | 0.230104 |
Target: 5'- ---cCGGcGaCGCGCccGCGCCCGAUCCg -3' miRNA: 3'- gcuaGUC-C-GCGCGuaCGUGGGCUAGG- -5' |
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24103 | 5' | -56.6 | NC_005262.1 | + | 56922 | 0.75 | 0.248332 |
Target: 5'- aGAUCaAGGcCGCGCucgagaagcGCACgCCGAUCCg -3' miRNA: 3'- gCUAG-UCC-GCGCGua-------CGUG-GGCUAGG- -5' |
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24103 | 5' | -56.6 | NC_005262.1 | + | 8904 | 0.74 | 0.28065 |
Target: 5'- aCGGUCcgcucuuGGGUGCGCGgcgaaaaGCGCCCGAUUa -3' miRNA: 3'- -GCUAG-------UCCGCGCGUa------CGUGGGCUAGg -5' |
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24103 | 5' | -56.6 | NC_005262.1 | + | 44845 | 0.74 | 0.281343 |
Target: 5'- gGAUCAGGCGaauGCGUGgGCCCGcgaggaCCg -3' miRNA: 3'- gCUAGUCCGCg--CGUACgUGGGCua----GG- -5' |
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24103 | 5' | -56.6 | NC_005262.1 | + | 19127 | 0.73 | 0.310188 |
Target: 5'- gCGGUCGGGCa-GCAUGUcgauaggaACCCGGUUCa -3' miRNA: 3'- -GCUAGUCCGcgCGUACG--------UGGGCUAGG- -5' |
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24103 | 5' | -56.6 | NC_005262.1 | + | 12657 | 0.73 | 0.325433 |
Target: 5'- gCGcgCGcGGCGCGCGgcgaacccUGCGCCCGuUCUg -3' miRNA: 3'- -GCuaGU-CCGCGCGU--------ACGUGGGCuAGG- -5' |
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24103 | 5' | -56.6 | NC_005262.1 | + | 58947 | 0.72 | 0.341229 |
Target: 5'- uCGGUC-GGCGCGCA-GCAgUCGAaCCa -3' miRNA: 3'- -GCUAGuCCGCGCGUaCGUgGGCUaGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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