miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24103 5' -56.6 NC_005262.1 + 59976 1.11 0.000654
Target:  5'- uCGAUCAGGCGCGCAUGCACCCGAUCCu -3'
miRNA:   3'- -GCUAGUCCGCGCGUACGUGGGCUAGG- -5'
24103 5' -56.6 NC_005262.1 + 41111 0.82 0.080256
Target:  5'- gCGGUCgAGGCGCGUcUGCGCaCUGGUCCg -3'
miRNA:   3'- -GCUAG-UCCGCGCGuACGUG-GGCUAGG- -5'
24103 5' -56.6 NC_005262.1 + 45640 0.78 0.143188
Target:  5'- gCGAUCAGGCGgGCAcGCGcuCCCGGUUg -3'
miRNA:   3'- -GCUAGUCCGCgCGUaCGU--GGGCUAGg -5'
24103 5' -56.6 NC_005262.1 + 37931 0.76 0.202244
Target:  5'- aCGAUU-GGCGCGCAUGgACCgCGAcgCCa -3'
miRNA:   3'- -GCUAGuCCGCGCGUACgUGG-GCUa-GG- -5'
24103 5' -56.6 NC_005262.1 + 44674 0.75 0.230104
Target:  5'- ---cCGGcGaCGCGCccGCGCCCGAUCCg -3'
miRNA:   3'- gcuaGUC-C-GCGCGuaCGUGGGCUAGG- -5'
24103 5' -56.6 NC_005262.1 + 17886 0.75 0.230104
Target:  5'- uGAUC-GGCGCGC--GCAUCCGGUCg -3'
miRNA:   3'- gCUAGuCCGCGCGuaCGUGGGCUAGg -5'
24103 5' -56.6 NC_005262.1 + 56922 0.75 0.248332
Target:  5'- aGAUCaAGGcCGCGCucgagaagcGCACgCCGAUCCg -3'
miRNA:   3'- gCUAG-UCC-GCGCGua-------CGUG-GGCUAGG- -5'
24103 5' -56.6 NC_005262.1 + 55029 0.74 0.254668
Target:  5'- uCGAUCAagccGGUGUcccacGCAUGCuuuauguuGCCCGAUCCg -3'
miRNA:   3'- -GCUAGU----CCGCG-----CGUACG--------UGGGCUAGG- -5'
24103 5' -56.6 NC_005262.1 + 9363 0.74 0.274473
Target:  5'- cCGGUCGGcGCGCGCG-GCGgCCUGcgCCu -3'
miRNA:   3'- -GCUAGUC-CGCGCGUaCGU-GGGCuaGG- -5'
24103 5' -56.6 NC_005262.1 + 8904 0.74 0.28065
Target:  5'- aCGGUCcgcucuuGGGUGCGCGgcgaaaaGCGCCCGAUUa -3'
miRNA:   3'- -GCUAG-------UCCGCGCGUa------CGUGGGCUAGg -5'
24103 5' -56.6 NC_005262.1 + 44845 0.74 0.281343
Target:  5'- gGAUCAGGCGaauGCGUGgGCCCGcgaggaCCg -3'
miRNA:   3'- gCUAGUCCGCg--CGUACgUGGGCua----GG- -5'
24103 5' -56.6 NC_005262.1 + 19127 0.73 0.310188
Target:  5'- gCGGUCGGGCa-GCAUGUcgauaggaACCCGGUUCa -3'
miRNA:   3'- -GCUAGUCCGcgCGUACG--------UGGGCUAGG- -5'
24103 5' -56.6 NC_005262.1 + 3818 0.73 0.325433
Target:  5'- gGAUCGGGUGCaUgcGCGCCUGAUCg -3'
miRNA:   3'- gCUAGUCCGCGcGuaCGUGGGCUAGg -5'
24103 5' -56.6 NC_005262.1 + 12657 0.73 0.325433
Target:  5'- gCGcgCGcGGCGCGCGgcgaacccUGCGCCCGuUCUg -3'
miRNA:   3'- -GCuaGU-CCGCGCGU--------ACGUGGGCuAGG- -5'
24103 5' -56.6 NC_005262.1 + 12559 0.73 0.325433
Target:  5'- cCGuagCcGGCGCGCAUGaggaGCCCGGUgCg -3'
miRNA:   3'- -GCua-GuCCGCGCGUACg---UGGGCUAgG- -5'
24103 5' -56.6 NC_005262.1 + 2186 0.72 0.333263
Target:  5'- --uUCAGGCGCGCGcGCuucuGCUCGGUCg -3'
miRNA:   3'- gcuAGUCCGCGCGUaCG----UGGGCUAGg -5'
24103 5' -56.6 NC_005262.1 + 58947 0.72 0.341229
Target:  5'- uCGGUC-GGCGCGCA-GCAgUCGAaCCa -3'
miRNA:   3'- -GCUAGuCCGCGCGUaCGUgGGCUaGG- -5'
24103 5' -56.6 NC_005262.1 + 49750 0.71 0.391871
Target:  5'- cCGAcgCcGGCgGCGCccGCGCCCGAggcUCCg -3'
miRNA:   3'- -GCUa-GuCCG-CGCGuaCGUGGGCU---AGG- -5'
24103 5' -56.6 NC_005262.1 + 53697 0.71 0.409806
Target:  5'- ---cCGGGCGCGCAga-ACCCGG-CCg -3'
miRNA:   3'- gcuaGUCCGCGCGUacgUGGGCUaGG- -5'
24103 5' -56.6 NC_005262.1 + 46393 0.71 0.418963
Target:  5'- cCGAaCAGGCGCGCcucgucgggcUGgGCCCGcaagGUCCg -3'
miRNA:   3'- -GCUaGUCCGCGCGu---------ACgUGGGC----UAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.