Results 21 - 40 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24104 | 5' | -57.1 | NC_005262.1 | + | 33700 | 0.73 | 0.294858 |
Target: 5'- gGC-AAGGUC-CCGGCCGCcaacaugAAGAUCGa -3' miRNA: 3'- -CGcUUCCAGcGGCCGGCG-------UUCUAGCa -5' |
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24104 | 5' | -57.1 | NC_005262.1 | + | 60203 | 0.73 | 0.302832 |
Target: 5'- gGC-AAGGa-GCCGGCCgGCGAGGUCGg -3' miRNA: 3'- -CGcUUCCagCGGCCGG-CGUUCUAGCa -5' |
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24104 | 5' | -57.1 | NC_005262.1 | + | 35226 | 0.71 | 0.357437 |
Target: 5'- uGCGGAGGUCGgCGGC-GC--GAUCGg -3' miRNA: 3'- -CGCUUCCAGCgGCCGgCGuuCUAGCa -5' |
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24104 | 5' | -57.1 | NC_005262.1 | + | 55942 | 0.71 | 0.400472 |
Target: 5'- uCGAGGG-CGgCGGCCGUcAGAUCa- -3' miRNA: 3'- cGCUUCCaGCgGCCGGCGuUCUAGca -5' |
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24104 | 5' | -57.1 | NC_005262.1 | + | 52942 | 0.7 | 0.437192 |
Target: 5'- uGCGccgccuGGGcuUCGCCGGCgGCAAGGugcUCGa -3' miRNA: 3'- -CGCu-----UCC--AGCGGCCGgCGUUCU---AGCa -5' |
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24104 | 5' | -57.1 | NC_005262.1 | + | 30872 | 0.7 | 0.437192 |
Target: 5'- cCGAGGaGUCGCCGaGCgGCcGGAUgGUg -3' miRNA: 3'- cGCUUC-CAGCGGC-CGgCGuUCUAgCA- -5' |
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24104 | 5' | -57.1 | NC_005262.1 | + | 3672 | 0.7 | 0.44667 |
Target: 5'- cGCGGccGUCGCUGGCCGUGAcGA-CGg -3' miRNA: 3'- -CGCUucCAGCGGCCGGCGUU-CUaGCa -5' |
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24104 | 5' | -57.1 | NC_005262.1 | + | 45702 | 0.7 | 0.456262 |
Target: 5'- uCGAGGGccggcaGCCGGCCGU--GAUCGa -3' miRNA: 3'- cGCUUCCag----CGGCCGGCGuuCUAGCa -5' |
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24104 | 5' | -57.1 | NC_005262.1 | + | 49140 | 0.68 | 0.533471 |
Target: 5'- gGCGAAGGUCGgCacggugggcgugcaGGCCGCA---UCGg -3' miRNA: 3'- -CGCUUCCAGCgG--------------CCGGCGUucuAGCa -5' |
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24104 | 5' | -57.1 | NC_005262.1 | + | 57473 | 0.69 | 0.515971 |
Target: 5'- aUGGAGGUCgagggcgagaaGCCGGCCGaCGAGG-CGc -3' miRNA: 3'- cGCUUCCAG-----------CGGCCGGC-GUUCUaGCa -5' |
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24104 | 5' | -57.1 | NC_005262.1 | + | 49583 | 0.69 | 0.512906 |
Target: 5'- uGCaGAAGGccgacaagaaugugUCGCuCGGCCGCGAcGUCGc -3' miRNA: 3'- -CG-CUUCC--------------AGCG-GCCGGCGUUcUAGCa -5' |
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24104 | 5' | -57.1 | NC_005262.1 | + | 30092 | 0.69 | 0.511886 |
Target: 5'- -aGAAGGgcgacgacaCGCCGGCCGCcgcgaagcccacGAUCGUg -3' miRNA: 3'- cgCUUCCa--------GCGGCCGGCGuu----------CUAGCA- -5' |
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24104 | 5' | -57.1 | NC_005262.1 | + | 34162 | 0.69 | 0.495686 |
Target: 5'- cCGGccGUCGCCGGCaCG-AAGGUCGa -3' miRNA: 3'- cGCUucCAGCGGCCG-GCgUUCUAGCa -5' |
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24104 | 5' | -57.1 | NC_005262.1 | + | 52698 | 0.69 | 0.475771 |
Target: 5'- -gGAAGGcCGCCGGCCGaCGccGGA-CGa -3' miRNA: 3'- cgCUUCCaGCGGCCGGC-GU--UCUaGCa -5' |
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24104 | 5' | -57.1 | NC_005262.1 | + | 17688 | 0.7 | 0.456262 |
Target: 5'- gGCGAAGaa-GCCGGCCGU--GGUCGc -3' miRNA: 3'- -CGCUUCcagCGGCCGGCGuuCUAGCa -5' |
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24104 | 5' | -57.1 | NC_005262.1 | + | 48030 | 0.74 | 0.254878 |
Target: 5'- aUGAGGaaGUCGCCGGCCGgCAGGugcuUCGUc -3' miRNA: 3'- cGCUUC--CAGCGGCCGGC-GUUCu---AGCA- -5' |
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24104 | 5' | -57.1 | NC_005262.1 | + | 10859 | 0.66 | 0.695905 |
Target: 5'- gGCGAagcccAGGcggCGCaGGCCGUcguAGAUCGa -3' miRNA: 3'- -CGCU-----UCCa--GCGgCCGGCGu--UCUAGCa -5' |
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24104 | 5' | -57.1 | NC_005262.1 | + | 22421 | 0.66 | 0.664063 |
Target: 5'- cGCGuAGGUCaGCCGuGCCGU----UCGUg -3' miRNA: 3'- -CGCuUCCAG-CGGC-CGGCGuucuAGCA- -5' |
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24104 | 5' | -57.1 | NC_005262.1 | + | 21578 | 0.66 | 0.664063 |
Target: 5'- cGCGAgcGGGUaCGUCGuGCCGCcgacGAUCa- -3' miRNA: 3'- -CGCU--UCCA-GCGGC-CGGCGuu--CUAGca -5' |
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24104 | 5' | -57.1 | NC_005262.1 | + | 4824 | 0.66 | 0.653379 |
Target: 5'- gGCGuGAGGcCGCCGGCgGCcGGcugguUCGa -3' miRNA: 3'- -CGC-UUCCaGCGGCCGgCGuUCu----AGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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