miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24104 5' -57.1 NC_005262.1 + 34961 0.67 0.599868
Target:  5'- uCGAcgcGG-CGCuCGGCCGCAAG-UCGa -3'
miRNA:   3'- cGCUu--CCaGCG-GCCGGCGUUCuAGCa -5'
24104 5' -57.1 NC_005262.1 + 30092 0.69 0.511886
Target:  5'- -aGAAGGgcgacgacaCGCCGGCCGCcgcgaagcccacGAUCGUg -3'
miRNA:   3'- cgCUUCCa--------GCGGCCGGCGuu----------CUAGCA- -5'
24104 5' -57.1 NC_005262.1 + 49583 0.69 0.512906
Target:  5'- uGCaGAAGGccgacaagaaugugUCGCuCGGCCGCGAcGUCGc -3'
miRNA:   3'- -CG-CUUCC--------------AGCG-GCCGGCGUUcUAGCa -5'
24104 5' -57.1 NC_005262.1 + 57473 0.69 0.515971
Target:  5'- aUGGAGGUCgagggcgagaaGCCGGCCGaCGAGG-CGc -3'
miRNA:   3'- cGCUUCCAG-----------CGGCCGGC-GUUCUaGCa -5'
24104 5' -57.1 NC_005262.1 + 49140 0.68 0.533471
Target:  5'- gGCGAAGGUCGgCacggugggcgugcaGGCCGCA---UCGg -3'
miRNA:   3'- -CGCUUCCAGCgG--------------CCGGCGUucuAGCa -5'
24104 5' -57.1 NC_005262.1 + 43850 0.68 0.557471
Target:  5'- cGCGgcGGUgCGCCGGCaggaccucgGCGcGAUCGc -3'
miRNA:   3'- -CGCuuCCA-GCGGCCGg--------CGUuCUAGCa -5'
24104 5' -57.1 NC_005262.1 + 55802 0.68 0.568004
Target:  5'- aGCaGAAcGcCGCCGGCgGCuacGAGGUCGUg -3'
miRNA:   3'- -CG-CUUcCaGCGGCCGgCG---UUCUAGCA- -5'
24104 5' -57.1 NC_005262.1 + 5029 0.67 0.578586
Target:  5'- aGCGGcAGuugcUCGCCGGCCGgCGccuGAUCGg -3'
miRNA:   3'- -CGCU-UCc---AGCGGCCGGC-GUu--CUAGCa -5'
24104 5' -57.1 NC_005262.1 + 32176 0.67 0.599868
Target:  5'- -aGAAGGcggCGgCGGCgGCAgaAGGUCGg -3'
miRNA:   3'- cgCUUCCa--GCgGCCGgCGU--UCUAGCa -5'
24104 5' -57.1 NC_005262.1 + 34162 0.69 0.495686
Target:  5'- cCGGccGUCGCCGGCaCG-AAGGUCGa -3'
miRNA:   3'- cGCUucCAGCGGCCG-GCgUUCUAGCa -5'
24104 5' -57.1 NC_005262.1 + 52698 0.69 0.475771
Target:  5'- -gGAAGGcCGCCGGCCGaCGccGGA-CGa -3'
miRNA:   3'- cgCUUCCaGCGGCCGGC-GU--UCUaGCa -5'
24104 5' -57.1 NC_005262.1 + 17688 0.7 0.456262
Target:  5'- gGCGAAGaa-GCCGGCCGU--GGUCGc -3'
miRNA:   3'- -CGCUUCcagCGGCCGGCGuuCUAGCa -5'
24104 5' -57.1 NC_005262.1 + 33700 0.73 0.294858
Target:  5'- gGC-AAGGUC-CCGGCCGCcaacaugAAGAUCGa -3'
miRNA:   3'- -CGcUUCCAGcGGCCGGCG-------UUCUAGCa -5'
24104 5' -57.1 NC_005262.1 + 60203 0.73 0.302832
Target:  5'- gGC-AAGGa-GCCGGCCgGCGAGGUCGg -3'
miRNA:   3'- -CGcUUCCagCGGCCGG-CGUUCUAGCa -5'
24104 5' -57.1 NC_005262.1 + 35226 0.71 0.357437
Target:  5'- uGCGGAGGUCGgCGGC-GC--GAUCGg -3'
miRNA:   3'- -CGCUUCCAGCgGCCGgCGuuCUAGCa -5'
24104 5' -57.1 NC_005262.1 + 55942 0.71 0.400472
Target:  5'- uCGAGGG-CGgCGGCCGUcAGAUCa- -3'
miRNA:   3'- cGCUUCCaGCgGCCGGCGuUCUAGca -5'
24104 5' -57.1 NC_005262.1 + 52942 0.7 0.437192
Target:  5'- uGCGccgccuGGGcuUCGCCGGCgGCAAGGugcUCGa -3'
miRNA:   3'- -CGCu-----UCC--AGCGGCCGgCGUUCU---AGCa -5'
24104 5' -57.1 NC_005262.1 + 30872 0.7 0.437192
Target:  5'- cCGAGGaGUCGCCGaGCgGCcGGAUgGUg -3'
miRNA:   3'- cGCUUC-CAGCGGC-CGgCGuUCUAgCA- -5'
24104 5' -57.1 NC_005262.1 + 3672 0.7 0.44667
Target:  5'- cGCGGccGUCGCUGGCCGUGAcGA-CGg -3'
miRNA:   3'- -CGCUucCAGCGGCCGGCGUU-CUaGCa -5'
24104 5' -57.1 NC_005262.1 + 45702 0.7 0.456262
Target:  5'- uCGAGGGccggcaGCCGGCCGU--GAUCGa -3'
miRNA:   3'- cGCUUCCag----CGGCCGGCGuuCUAGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.