miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24104 5' -57.1 NC_005262.1 + 1915 0.67 0.621255
Target:  5'- gGCGGAGGgUGCgGGuuGCGuggcucgcuGGUCGUa -3'
miRNA:   3'- -CGCUUCCaGCGgCCggCGUu--------CUAGCA- -5'
24104 5' -57.1 NC_005262.1 + 3672 0.7 0.44667
Target:  5'- cGCGGccGUCGCUGGCCGUGAcGA-CGg -3'
miRNA:   3'- -CGCUucCAGCGGCCGGCGUU-CUaGCa -5'
24104 5' -57.1 NC_005262.1 + 4824 0.66 0.653379
Target:  5'- gGCGuGAGGcCGCCGGCgGCcGGcugguUCGa -3'
miRNA:   3'- -CGC-UUCCaGCGGCCGgCGuUCu----AGCa -5'
24104 5' -57.1 NC_005262.1 + 5029 0.67 0.578586
Target:  5'- aGCGGcAGuugcUCGCCGGCCGgCGccuGAUCGg -3'
miRNA:   3'- -CGCU-UCc---AGCGGCCGGC-GUu--CUAGCa -5'
24104 5' -57.1 NC_005262.1 + 6377 0.66 0.642677
Target:  5'- cCGGAGcGUUGUCGGCCGCcuucUCGg -3'
miRNA:   3'- cGCUUC-CAGCGGCCGGCGuucuAGCa -5'
24104 5' -57.1 NC_005262.1 + 9681 0.66 0.642677
Target:  5'- gGCGAGGG-CGCCgucgacgucgaGGCgcaGCAgcGGGUCGUu -3'
miRNA:   3'- -CGCUUCCaGCGG-----------CCGg--CGU--UCUAGCA- -5'
24104 5' -57.1 NC_005262.1 + 9783 0.67 0.58921
Target:  5'- gGCGAgcAGGUUGCCGugcuucGCCGUgaAGGcGUCGUa -3'
miRNA:   3'- -CGCU--UCCAGCGGC------CGGCG--UUC-UAGCA- -5'
24104 5' -57.1 NC_005262.1 + 10634 0.67 0.621255
Target:  5'- cGCGAagggcGGGUUGCCGaucGCCGCGucgaAGAacUCGc -3'
miRNA:   3'- -CGCU-----UCCAGCGGC---CGGCGU----UCU--AGCa -5'
24104 5' -57.1 NC_005262.1 + 10859 0.66 0.695905
Target:  5'- gGCGAagcccAGGcggCGCaGGCCGUcguAGAUCGa -3'
miRNA:   3'- -CGCU-----UCCa--GCGgCCGGCGu--UCUAGCa -5'
24104 5' -57.1 NC_005262.1 + 12262 0.73 0.310224
Target:  5'- cGCGAGccGGUCGCCGuGUugCGCAcGGUCGUc -3'
miRNA:   3'- -CGCUU--CCAGCGGC-CG--GCGUuCUAGCA- -5'
24104 5' -57.1 NC_005262.1 + 12789 0.67 0.631966
Target:  5'- gGCGc-GGUCGCCGGUCGCuuccUUGg -3'
miRNA:   3'- -CGCuuCCAGCGGCCGGCGuucuAGCa -5'
24104 5' -57.1 NC_005262.1 + 13687 0.66 0.642677
Target:  5'- cGCGcgcGGU-GCUGGCgCGUGAGGUCGa -3'
miRNA:   3'- -CGCuu-CCAgCGGCCG-GCGUUCUAGCa -5'
24104 5' -57.1 NC_005262.1 + 15412 0.67 0.614832
Target:  5'- aGCGAGgcgcGGUCguaacccgacugauaGCCGGCCGCcagcagcgccGGGUCGg -3'
miRNA:   3'- -CGCUU----CCAG---------------CGGCCGGCGu---------UCUAGCa -5'
24104 5' -57.1 NC_005262.1 + 17688 0.7 0.456262
Target:  5'- gGCGAAGaa-GCCGGCCGU--GGUCGc -3'
miRNA:   3'- -CGCUUCcagCGGCCGGCGuuCUAGCa -5'
24104 5' -57.1 NC_005262.1 + 18536 0.67 0.610553
Target:  5'- cGCGuucgacgcuccGAGGUUGCCGGUCGcCGAGuugccggCGUu -3'
miRNA:   3'- -CGC-----------UUCCAGCGGCCGGC-GUUCua-----GCA- -5'
24104 5' -57.1 NC_005262.1 + 21578 0.66 0.664063
Target:  5'- cGCGAgcGGGUaCGUCGuGCCGCcgacGAUCa- -3'
miRNA:   3'- -CGCU--UCCA-GCGGC-CGGCGuu--CUAGca -5'
24104 5' -57.1 NC_005262.1 + 21685 0.66 0.675782
Target:  5'- aGCGgcGG-CGCCGcGCUGCuguacgcgggcacgcAGAUCGg -3'
miRNA:   3'- -CGCuuCCaGCGGC-CGGCGu--------------UCUAGCa -5'
24104 5' -57.1 NC_005262.1 + 22421 0.66 0.664063
Target:  5'- cGCGuAGGUCaGCCGuGCCGU----UCGUg -3'
miRNA:   3'- -CGCuUCCAG-CGGC-CGGCGuucuAGCA- -5'
24104 5' -57.1 NC_005262.1 + 22603 0.7 0.42783
Target:  5'- uCGAAgcGGUCGCCGGgCGCGcacgcGAUCGc -3'
miRNA:   3'- cGCUU--CCAGCGGCCgGCGUu----CUAGCa -5'
24104 5' -57.1 NC_005262.1 + 23142 0.67 0.631966
Target:  5'- cGUGGgucGGGUCGCUGacGCCGUgcccguggccGGGGUCGUu -3'
miRNA:   3'- -CGCU---UCCAGCGGC--CGGCG----------UUCUAGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.