miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24104 5' -57.1 NC_005262.1 + 60379 1.08 0.000977
Target:  5'- gGCGAAGGUCGCCGGCCGCAAGAUCGUc -3'
miRNA:   3'- -CGCUUCCAGCGGCCGGCGUUCUAGCA- -5'
24104 5' -57.1 NC_005262.1 + 48030 0.74 0.254878
Target:  5'- aUGAGGaaGUCGCCGGCCGgCAGGugcuUCGUc -3'
miRNA:   3'- cGCUUC--CAGCGGCCGGC-GUUCu---AGCA- -5'
24104 5' -57.1 NC_005262.1 + 33700 0.73 0.294858
Target:  5'- gGC-AAGGUC-CCGGCCGCcaacaugAAGAUCGa -3'
miRNA:   3'- -CGcUUCCAGcGGCCGGCG-------UUCUAGCa -5'
24104 5' -57.1 NC_005262.1 + 30848 0.73 0.295577
Target:  5'- aCGguGGUUGCCGGUCGgAGcGAUCGUg -3'
miRNA:   3'- cGCuuCCAGCGGCCGGCgUU-CUAGCA- -5'
24104 5' -57.1 NC_005262.1 + 60203 0.73 0.302832
Target:  5'- gGC-AAGGa-GCCGGCCgGCGAGGUCGg -3'
miRNA:   3'- -CGcUUCCagCGGCCGG-CGUUCUAGCa -5'
24104 5' -57.1 NC_005262.1 + 29901 0.73 0.302832
Target:  5'- cCGAucGGGcCGCCGGCCgacGCAcGAUCGUc -3'
miRNA:   3'- cGCU--UCCaGCGGCCGG---CGUuCUAGCA- -5'
24104 5' -57.1 NC_005262.1 + 12262 0.73 0.310224
Target:  5'- cGCGAGccGGUCGCCGuGUugCGCAcGGUCGUc -3'
miRNA:   3'- -CGCUU--CCAGCGGC-CG--GCGUuCUAGCA- -5'
24104 5' -57.1 NC_005262.1 + 38956 0.72 0.341155
Target:  5'- gGCGcAGGGUgaucggcacggCGCCGGCCGC--GAUCGc -3'
miRNA:   3'- -CGC-UUCCA-----------GCGGCCGGCGuuCUAGCa -5'
24104 5' -57.1 NC_005262.1 + 35226 0.71 0.357437
Target:  5'- uGCGGAGGUCGgCGGC-GC--GAUCGg -3'
miRNA:   3'- -CGCUUCCAGCgGCCGgCGuuCUAGCa -5'
24104 5' -57.1 NC_005262.1 + 55942 0.71 0.400472
Target:  5'- uCGAGGG-CGgCGGCCGUcAGAUCa- -3'
miRNA:   3'- cGCUUCCaGCgGCCGGCGuUCUAGca -5'
24104 5' -57.1 NC_005262.1 + 38052 0.7 0.409468
Target:  5'- cGUGAGcGGcUUGCCGGCCuGCGcGAUCGc -3'
miRNA:   3'- -CGCUU-CC-AGCGGCCGG-CGUuCUAGCa -5'
24104 5' -57.1 NC_005262.1 + 51521 0.7 0.409468
Target:  5'- aGCucGGcUCGCCGGCCGC--GAUCGa -3'
miRNA:   3'- -CGcuUCcAGCGGCCGGCGuuCUAGCa -5'
24104 5' -57.1 NC_005262.1 + 47736 0.7 0.418588
Target:  5'- ---cAGGaUCGUCGGCCGCAAG-UCGc -3'
miRNA:   3'- cgcuUCC-AGCGGCCGGCGUUCuAGCa -5'
24104 5' -57.1 NC_005262.1 + 22603 0.7 0.42783
Target:  5'- uCGAAgcGGUCGCCGGgCGCGcacgcGAUCGc -3'
miRNA:   3'- cGCUU--CCAGCGGCCgGCGUu----CUAGCa -5'
24104 5' -57.1 NC_005262.1 + 30872 0.7 0.437192
Target:  5'- cCGAGGaGUCGCCGaGCgGCcGGAUgGUg -3'
miRNA:   3'- cGCUUC-CAGCGGC-CGgCGuUCUAgCA- -5'
24104 5' -57.1 NC_005262.1 + 52942 0.7 0.437192
Target:  5'- uGCGccgccuGGGcuUCGCCGGCgGCAAGGugcUCGa -3'
miRNA:   3'- -CGCu-----UCC--AGCGGCCGgCGUUCU---AGCa -5'
24104 5' -57.1 NC_005262.1 + 3672 0.7 0.44667
Target:  5'- cGCGGccGUCGCUGGCCGUGAcGA-CGg -3'
miRNA:   3'- -CGCUucCAGCGGCCGGCGUU-CUaGCa -5'
24104 5' -57.1 NC_005262.1 + 17688 0.7 0.456262
Target:  5'- gGCGAAGaa-GCCGGCCGU--GGUCGc -3'
miRNA:   3'- -CGCUUCcagCGGCCGGCGuuCUAGCa -5'
24104 5' -57.1 NC_005262.1 + 45702 0.7 0.456262
Target:  5'- uCGAGGGccggcaGCCGGCCGU--GAUCGa -3'
miRNA:   3'- cGCUUCCag----CGGCCGGCGuuCUAGCa -5'
24104 5' -57.1 NC_005262.1 + 52698 0.69 0.475771
Target:  5'- -gGAAGGcCGCCGGCCGaCGccGGA-CGa -3'
miRNA:   3'- cgCUUCCaGCGGCCGGC-GU--UCUaGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.