miRNA display CGI


Results 21 - 40 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24105 3' -64.8 NC_005262.1 + 13521 0.66 0.329588
Target:  5'- -aCGGGCucGGCcgGcGCGGGCGCgcccucguuGCGGCg -3'
miRNA:   3'- ccGCCCGc-UCGa-C-UGCCCGCG---------CGCCG- -5'
24105 3' -64.8 NC_005262.1 + 13710 0.68 0.237884
Target:  5'- cGCGGcGCGGGUUcGGucGGCGCaGCGGCc -3'
miRNA:   3'- cCGCC-CGCUCGA-CUgcCCGCG-CGCCG- -5'
24105 3' -64.8 NC_005262.1 + 13792 0.69 0.195241
Target:  5'- cGGUGGGCGccggcgcGGCUucaucGGCGGGaGCG-GGCg -3'
miRNA:   3'- -CCGCCCGC-------UCGA-----CUGCCCgCGCgCCG- -5'
24105 3' -64.8 NC_005262.1 + 14023 0.7 0.164337
Target:  5'- cGGCGcGGCagcggccgGAGCcu-CGGGCGCG-GGCg -3'
miRNA:   3'- -CCGC-CCG--------CUCGacuGCCCGCGCgCCG- -5'
24105 3' -64.8 NC_005262.1 + 15500 0.66 0.322247
Target:  5'- cGGCGgcucgcucaccGGCGAGCUGcACaaGGCGaUGUGGUu -3'
miRNA:   3'- -CCGC-----------CCGCUCGAC-UGc-CCGC-GCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 15574 0.69 0.215924
Target:  5'- aGCaGGagGAGCUGGa-GGCGCGCGcGCg -3'
miRNA:   3'- cCGcCCg-CUCGACUgcCCGCGCGC-CG- -5'
24105 3' -64.8 NC_005262.1 + 15740 0.71 0.144396
Target:  5'- cGGCaGGuGCGAccgacgcGCUuGCGGGCGCGgcCGGCu -3'
miRNA:   3'- -CCG-CC-CGCU-------CGAcUGCCCGCGC--GCCG- -5'
24105 3' -64.8 NC_005262.1 + 16083 0.66 0.300961
Target:  5'- aGGC-GGCGAGCcgccgcccGGCGcGGUGCuuGGCg -3'
miRNA:   3'- -CCGcCCGCUCGa-------CUGC-CCGCGcgCCG- -5'
24105 3' -64.8 NC_005262.1 + 17036 0.67 0.294111
Target:  5'- aGGCGGaaaagcagcuccGCGAGCUcGuCGcGCGCaCGGCg -3'
miRNA:   3'- -CCGCC------------CGCUCGA-CuGCcCGCGcGCCG- -5'
24105 3' -64.8 NC_005262.1 + 17099 0.67 0.267927
Target:  5'- cGGCGGGCcgcGAGgaGGuCcacCGCGCGGCg -3'
miRNA:   3'- -CCGCCCG---CUCgaCU-GcccGCGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 17213 0.69 0.189523
Target:  5'- cGGCGaGGaCGGcGCUGGCgucguggucgucguGGGCGuCGCGGg -3'
miRNA:   3'- -CCGC-CC-GCU-CGACUG--------------CCCGC-GCGCCg -5'
24105 3' -64.8 NC_005262.1 + 17260 0.66 0.315029
Target:  5'- cGGCGGccggcgccgcGCuGGGCUGcugcgcgggcAgGGGCGuCGCGGUc -3'
miRNA:   3'- -CCGCC----------CG-CUCGAC----------UgCCCGC-GCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 17342 0.73 0.111878
Target:  5'- cGGCGcGGCauucGGGUccgGcGCGGGCgGCGCGGCg -3'
miRNA:   3'- -CCGC-CCG----CUCGa--C-UGCCCG-CGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 17394 0.69 0.205609
Target:  5'- uGCGGGCccAGCccGACGaGGCGCGCcuguucGGCc -3'
miRNA:   3'- cCGCCCGc-UCGa-CUGC-CCGCGCG------CCG- -5'
24105 3' -64.8 NC_005262.1 + 17570 0.77 0.048763
Target:  5'- cGGCGGcGCGcgaagccgaggagaAGCUGGCGGcgcaGCGCGCGGa -3'
miRNA:   3'- -CCGCC-CGC--------------UCGACUGCC----CGCGCGCCg -5'
24105 3' -64.8 NC_005262.1 + 19079 0.7 0.168527
Target:  5'- cGCGGcCGAGCUGcAUuuccucGCGCGCGGCg -3'
miRNA:   3'- cCGCCcGCUCGAC-UGcc----CGCGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 20579 0.67 0.294111
Target:  5'- aGCccGGCGAGCaGcGCGcGGCGCGCcGCa -3'
miRNA:   3'- cCGc-CCGCUCGaC-UGC-CCGCGCGcCG- -5'
24105 3' -64.8 NC_005262.1 + 20717 0.66 0.30027
Target:  5'- cGGuCaGGuCGAugaugaaGCUGcCGcGGCGCGCGGUg -3'
miRNA:   3'- -CC-GcCC-GCU-------CGACuGC-CCGCGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 21801 0.7 0.16684
Target:  5'- aGGCGGGCGuucgucgcguucuGCgcGGCGGuGUcaggcaacagGCGCGGCa -3'
miRNA:   3'- -CCGCCCGCu------------CGa-CUGCC-CG----------CGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 22708 0.66 0.300961
Target:  5'- uGGCcGGCGGcGUUGACGaGCGUGcCGGg -3'
miRNA:   3'- -CCGcCCGCU-CGACUGCcCGCGC-GCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.